Variant report

Variant	rs67091024
Chromosome Location	chr7:99670105-99670106
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99513908..99516258-chr7:99668490..99670311,2	K562	blood:
2	chr7:99601553..99605102-chr7:99669434..99672992,3	K562	blood:
3	chr7:99667576..99670225-chr7:99671160..99673270,2	MCF-7	breast:
4	chr7:99613641..99615215-chr7:99668829..99671768,2	K562	blood:
5	chr7:99668310..99676246-chr7:99677185..99681836,16	MCF-7	breast:
6	chr7:99537422..99540129-chr7:99668586..99670118,2	K562	blood:
7	chr7:99661987..99666406-chr7:99667743..99671681,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106261	Chromatin interaction
ENSG00000166526	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11558475	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11558476	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12532238	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12673441	0.85[ASN][1000 genomes]
rs4308665	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4421299	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4727445	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4729573	0.83[ASN][1000 genomes]
rs55969052	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56054049	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60697181	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6592	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67110214	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs68038211	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72615158	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72615159	0.85[ASN][1000 genomes]
rs7780686	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7796006	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7803317	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs941289	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829865	chr7:99430678-99755141	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
2	esv1830649	chr7:99430678-99755141	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
3	nsv534298	chr7:99478011-99886076	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1132 gene(s)	inside rSNPs	diseases
4	nsv469687	chr7:99572543-99755141	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1115 gene(s)	inside rSNPs	diseases
5	nsv482601	chr7:99572543-99755141	Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1115 gene(s)	inside rSNPs	diseases
6	nsv607931	chr7:99664817-99796146	Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1097 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99661600-99675200	ZNF genes & repeats	A549	lung
2	chr7:99664600-99673600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:99665800-99673400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:99665800-99673600	ZNF genes & repeats	Fetal Stomach	stomach
5	chr7:99666000-99675000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
6	chr7:99666400-99674000	ZNF genes & repeats	Fetal Intestine Small	intestine
7	chr7:99666400-99677200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:99666400-99678000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:99666600-99672000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:99666600-99674000	ZNF genes & repeats	Fetal Muscle Leg	muscle
11	chr7:99666800-99672000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:99666800-99673400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
13	chr7:99666800-99673600	ZNF genes & repeats	HSMM	muscle
14	chr7:99666800-99673800	ZNF genes & repeats	GM12878-XiMat	blood
15	chr7:99666800-99674400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
16	chr7:99666800-99675200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
17	chr7:99666800-99677000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr7:99667000-99671000	ZNF genes & repeats	NHLF	lung
19	chr7:99667000-99673400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
20	chr7:99667000-99673600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr7:99667200-99670400	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr7:99667200-99671000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
23	chr7:99667200-99671000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr7:99667200-99671400	ZNF genes & repeats	Lung	lung
25	chr7:99667200-99671800	ZNF genes & repeats	Fetal Muscle Trunk	muscle
26	chr7:99667200-99673000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
27	chr7:99667200-99673200	ZNF genes & repeats	Fetal Intestine Large	intestine
28	chr7:99667400-99670600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr7:99667400-99670800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
30	chr7:99667400-99670800	ZNF genes & repeats	Osteobl	bone
31	chr7:99667400-99671000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr7:99667400-99671000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
33	chr7:99667400-99671000	ZNF genes & repeats	Placenta	Placenta
34	chr7:99667400-99671400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
35	chr7:99667400-99671400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
36	chr7:99667400-99671400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
37	chr7:99667400-99671600	ZNF genes & repeats	HMEC	breast
38	chr7:99667400-99671800	ZNF genes & repeats	NH-A	brain
39	chr7:99667400-99673400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr7:99667400-99673600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
41	chr7:99667400-99674400	Strong transcription	HepG2	liver
42	chr7:99667400-99675000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr7:99667400-99675000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
44	chr7:99667600-99670400	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr7:99667600-99670400	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
46	chr7:99667600-99670400	ZNF genes & repeats	Rectal Smooth Muscle	rectum
47	chr7:99667600-99670600	ZNF genes & repeats	Primary T cells from cord blood	blood
48	chr7:99667600-99670600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr7:99667600-99670600	ZNF genes & repeats	Left Ventricle	heart
50	chr7:99667600-99670800	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell

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