Variant report

Variant	rs6709163
Chromosome Location	chr2:33889809-33889810
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10168188	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10191463	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10207886	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11675093	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11683557	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11689494	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13403343	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4670865	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4670866	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4670874	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57546748	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7421593	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350238	chr2:33849408-33979026	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv963221	chr2:33877828-33892244	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6709163	FAM98A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33880600-33895800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:33888800-33891000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr2:33888800-33891400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
4	chr2:33889000-33891600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chr2:33889200-33895600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:33889400-33891200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:33889600-33891400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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