Variant report

Variant	rs6710186
Chromosome Location	chr2:134324683-134324684
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11675814	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11683660	0.92[YRI][hapmap]
rs11688182	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11695364	0.91[YRI][hapmap]
rs1368096	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17816830	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1864816	1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1864817	0.85[CHB][hapmap];0.82[JPT][hapmap];0.98[ASN][1000 genomes]
rs34522146	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34570953	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34720835	0.98[ASN][1000 genomes]
rs4954068	0.90[ASN][1000 genomes]
rs6430432	0.86[EUR][1000 genomes]
rs6715224	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6723321	0.84[YRI][hapmap];0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997821	chr2:133868822-134360220	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv535927	chr2:133868822-134360220	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1003624	chr2:134126928-134583203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1006101	chr2:134263288-134973917	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	nsv516644	chr2:134301130-134391214	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv431713	chr2:134316522-134413604	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1013713	chr2:134322236-134644574	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv535931	chr2:134322236-134644574	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:134320000-134325600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:134322000-134324800	Enhancers	Brain Hippocampus Middle	brain
3	chr2:134322200-134325000	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:134322400-134325800	Weak transcription	Esophagus	oesophagus
5	chr2:134322600-134325600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr2:134323200-134324800	Weak transcription	Right Ventricle	heart
7	chr2:134323400-134324800	Enhancers	Left Ventricle	heart
8	chr2:134323800-134326400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr2:134324000-134324800	Enhancers	Fetal Intestine Large	intestine
10	chr2:134324000-134324800	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr2:134324000-134325000	Enhancers	Fetal Lung	lung
12	chr2:134324000-134325200	Flanking Active TSS	NHDF-Ad	bronchial
13	chr2:134324000-134325600	Enhancers	NHEK	skin
14	chr2:134324000-134326400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr2:134324200-134324800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr2:134324200-134325000	Enhancers	Hela-S3	cervix
17	chr2:134324200-134325200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
18	chr2:134324200-134325200	Enhancers	Stomach Mucosa	stomach
19	chr2:134324200-134325600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr2:134324200-134325600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr2:134324200-134325600	Enhancers	Fetal Heart	heart
22	chr2:134324200-134326400	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr2:134324200-134326400	Enhancers	HMEC	breast
24	chr2:134324400-134324800	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr2:134324400-134324800	Flanking Active TSS	Brain Anterior Caudate	brain
26	chr2:134324400-134324800	Flanking Active TSS	Brain Cingulate Gyrus	brain
27	chr2:134324400-134325000	Flanking Active TSS	Fetal Muscle Leg	muscle
28	chr2:134324400-134325000	Flanking Active TSS	Stomach Smooth Muscle	stomach
29	chr2:134324400-134325200	Enhancers	Fetal Brain Male	brain
30	chr2:134324400-134325400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr2:134324400-134325400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr2:134324400-134325600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr2:134324400-134325600	Flanking Active TSS	NHLF	lung
34	chr2:134324400-134325800	Flanking Active TSS	Fetal Stomach	stomach
35	chr2:134324400-134326400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr2:134324400-134326400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr2:134324400-134326400	Active TSS	Fetal Brain Female	brain
38	chr2:134324400-134326400	Flanking Active TSS	NH-A	brain
39	chr2:134324400-134326400	Flanking Active TSS	Osteobl	bone
40	chr2:134324400-134327000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr2:134324400-134327200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr2:134324400-134329000	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr2:134324600-134324800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr2:134324600-134324800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr2:134324600-134324800	Enhancers	Liver	Liver
46	chr2:134324600-134324800	Enhancers	Fetal Thymus	thymus
47	chr2:134324600-134324800	Enhancers	Right Atrium	heart
48	chr2:134324600-134325000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr2:134324600-134325000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr2:134324600-134325000	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links