Variant report

Variant	rs6710789
Chromosome Location	chr2:174081790-174081791
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:174076030..174078880-chr2:174080707..174082990,2	K562	blood:
2	chr2:174079336..174081370-chr2:174081399..174084609,3	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11685637	1.00[AFR][1000 genomes]
rs12619395	1.00[AFR][1000 genomes]
rs12623346	1.00[AFR][1000 genomes]
rs1345008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1439976	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17760587	1.00[AFR][1000 genomes]
rs3769202	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7425411	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs752729	1.00[AFR][1000 genomes]
rs7567603	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011724	chr2:173916482-174231908	Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv834460	chr2:173919464-174085288	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:174026600-174083200	Weak transcription	Esophagus	oesophagus
2	chr2:174048600-174095200	Weak transcription	Thymus	Thymus
3	chr2:174049200-174083200	Weak transcription	Small Intestine	intestine
4	chr2:174053400-174082000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr2:174053400-174089800	Weak transcription	Pancreas	Pancrea
6	chr2:174058000-174112800	Weak transcription	Spleen	Spleen
7	chr2:174060200-174092600	Weak transcription	Aorta	Aorta
8	chr2:174061000-174082000	Weak transcription	Fetal Brain Female	brain
9	chr2:174061200-174097600	Weak transcription	Lung	lung
10	chr2:174061400-174092200	Weak transcription	Brain Substantia Nigra	brain
11	chr2:174061600-174083200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr2:174061600-174083200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:174063600-174097600	Weak transcription	HSMM	muscle
14	chr2:174063800-174083200	Weak transcription	GM12878-XiMat	blood
15	chr2:174063800-174095000	Weak transcription	Right Ventricle	heart
16	chr2:174064200-174082800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr2:174064200-174083000	Weak transcription	HepG2	liver
18	chr2:174064200-174083400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr2:174064200-174097600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr2:174064600-174082000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr2:174064600-174083200	Weak transcription	Primary hematopoietic stem cells	blood
22	chr2:174069400-174081800	Weak transcription	Ovary	ovary
23	chr2:174069400-174082200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr2:174069400-174097000	Weak transcription	Fetal Muscle Trunk	muscle
25	chr2:174069400-174097600	Weak transcription	Primary B cells from cord blood	blood
26	chr2:174069600-174096600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr2:174070000-174081800	Weak transcription	Fetal Brain Male	brain
28	chr2:174071800-174094200	Weak transcription	Fetal Thymus	thymus
29	chr2:174072200-174095400	Weak transcription	Right Atrium	heart
30	chr2:174075400-174082000	Weak transcription	NHLF	lung
31	chr2:174075400-174097600	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr2:174075600-174083000	Weak transcription	Fetal Kidney	kidney
33	chr2:174075800-174081800	Weak transcription	NH-A	brain
34	chr2:174075800-174082800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr2:174075800-174082800	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr2:174075800-174083000	Weak transcription	Adipose Nuclei	Adipose
37	chr2:174076000-174081800	Weak transcription	NHDF-Ad	bronchial
38	chr2:174076000-174083000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr2:174076200-174082800	Weak transcription	Fetal Heart	heart
40	chr2:174076400-174081800	Weak transcription	Psoas Muscle	Psoas
41	chr2:174076400-174082200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr2:174076400-174083200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr2:174076400-174083200	Weak transcription	Dnd41	blood
44	chr2:174076400-174087800	Weak transcription	K562	blood
45	chr2:174076800-174082000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr2:174076800-174085800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr2:174077000-174082000	Weak transcription	Osteobl	bone
48	chr2:174077000-174086000	Weak transcription	A549	lung
49	chr2:174077000-174091800	Weak transcription	Duodenum Mucosa	Duodenum
50	chr2:174077400-174082400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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