Variant report

Variant	rs6711092
Chromosome Location	chr2:20268777-20268778
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:20268380..20271374-chr2:20576831..20579270,2	MCF-7	breast:
2	chr2:20214554..20219540-chr2:20268505..20271599,4	MCF-7	breast:
3	chr2:20268478..20271036-chr2:20289525..20291447,2	MCF-7	breast:
4	chr2:20258295..20259895-chr2:20267044..20269730,2	K562	blood:
5	chr2:20268337..20271291-chr2:20423747..20426134,3	MCF-7	breast:
6	chr2:20260254..20262852-chr2:20267314..20269443,2	K562	blood:

Variant related genes	Relation type
ENSG00000115884	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10184382	0.82[ASN][1000 genomes]
rs2126551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2126552	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60058643	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20266400-20270000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:20266600-20270600	Weak transcription	Fetal Heart	heart
3	chr2:20266600-20270800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr2:20266600-20271000	Weak transcription	Brain Substantia Nigra	brain
5	chr2:20266600-20271200	Weak transcription	Brain Angular Gyrus	brain
6	chr2:20266600-20271200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr2:20266600-20271200	Weak transcription	Esophagus	oesophagus
8	chr2:20266600-20271200	Weak transcription	Gastric	stomach
9	chr2:20266600-20271200	Weak transcription	Left Ventricle	heart
10	chr2:20266600-20271200	Weak transcription	Right Atrium	heart
11	chr2:20266600-20271200	Weak transcription	Right Ventricle	heart
12	chr2:20266600-20271200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr2:20266600-20271200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr2:20266600-20271200	Weak transcription	Stomach Mucosa	stomach
15	chr2:20266600-20272400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr2:20266600-20273000	Weak transcription	Psoas Muscle	Psoas
17	chr2:20267200-20268800	Enhancers	Fetal Stomach	stomach
18	chr2:20267200-20275000	Enhancers	Placenta	Placenta
19	chr2:20267400-20271200	Weak transcription	Colonic Mucosa	Colon
20	chr2:20267600-20268800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr2:20267600-20271000	Weak transcription	HepG2	liver
22	chr2:20268000-20268800	Enhancers	Fetal Muscle Leg	muscle
23	chr2:20268200-20268800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr2:20268200-20268800	Enhancers	Fetal Muscle Trunk	muscle
25	chr2:20268400-20270600	Weak transcription	A549	lung
26	chr2:20268400-20270800	Weak transcription	Rectal Smooth Muscle	rectum
27	chr2:20268400-20271200	Weak transcription	Fetal Intestine Small	intestine
28	chr2:20268600-20269800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr2:20268600-20269800	Weak transcription	NHDF-Ad	bronchial
30	chr2:20268600-20269800	Weak transcription	NHEK	skin
31	chr2:20268600-20270000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr2:20268600-20270000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr2:20268600-20270000	Weak transcription	Adipose Nuclei	Adipose
34	chr2:20268600-20270000	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr2:20268600-20270000	Weak transcription	Hela-S3	cervix
36	chr2:20268600-20270000	Weak transcription	HMEC	breast
37	chr2:20268600-20270200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr2:20268600-20270200	Weak transcription	Ovary	ovary
39	chr2:20268600-20270200	Weak transcription	NHLF	lung
40	chr2:20268600-20270400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr2:20268600-20270400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr2:20268600-20270400	Weak transcription	Osteobl	bone
43	chr2:20268600-20270600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr2:20268600-20270800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr2:20268600-20270800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr2:20268600-20271000	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr2:20268600-20271000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr2:20268600-20271000	Weak transcription	Colon Smooth Muscle	Colon
49	chr2:20268600-20271000	Weak transcription	Fetal Lung	lung
50	chr2:20268600-20271000	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links