Variant report

Variant	rs6711095
Chromosome Location	chr2:46666616-46666617
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:46661749..46663696-chr2:46665776..46668520,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000187600	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72877438	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012446	chr2:45921682-46737036	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv2757795	chr2:46532812-46874151	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv2759046	chr2:46532812-46874151	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
4	esv34650	chr2:46605659-46818992	Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	esv2756919	chr2:46614235-46756431	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	nsv437435	chr2:46636967-46763587	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
7	nsv1001902	chr2:46651624-46675665	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv997637	chr2:46651624-46676628	Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
9	nsv1003646	chr2:46651624-46677186	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
10	esv34937	chr2:46651624-46818586	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
11	nsv581745	chr2:46660445-46693963	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:46657200-46672200	Enhancers	HepG2	liver
2	chr2:46660800-46669600	Weak transcription	Pancreas	Pancrea
3	chr2:46662200-46678400	Weak transcription	Placenta	Placenta
4	chr2:46663200-46671400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr2:46665200-46668400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr2:46665400-46668200	Enhancers	K562	blood
7	chr2:46665400-46668400	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr2:46665600-46666800	Enhancers	Primary T cells from cord blood	blood
9	chr2:46665600-46667000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr2:46665600-46668000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr2:46665600-46668600	Enhancers	Primary T cells fromperipheralblood	blood
12	chr2:46665800-46668000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr2:46665800-46668000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr2:46665800-46668000	Enhancers	Dnd41	blood
15	chr2:46665800-46668200	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr2:46665800-46668600	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr2:46666000-46667000	Enhancers	Primary hematopoietic stem cells	blood
18	chr2:46666200-46667000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr2:46666200-46667000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr2:46666200-46667800	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr2:46666200-46668000	Enhancers	Thymus	Thymus
22	chr2:46666200-46668200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr2:46666200-46668200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr2:46666400-46668200	Enhancers	Fetal Thymus	thymus
25	chr2:46666600-46667000	Enhancers	HMEC	breast
26	chr2:46666600-46667200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr2:46666600-46667400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
28	chr2:46666600-46667600	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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