Variant report

Variant	rs6711206
Chromosome Location	chr2:39919736-39919737
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:39902995..39907146-chr2:39916459..39920307,3	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10170462	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs10186346	1.00[CEU][hapmap];0.84[JPT][hapmap];0.93[EUR][1000 genomes]
rs12712652	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12989245	0.82[EUR][1000 genomes]
rs13405084	0.83[EUR][1000 genomes]
rs13409487	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17024145	0.83[CEU][hapmap]
rs1861244	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2041736	0.81[EUR][1000 genomes]
rs2058618	0.96[CEU][hapmap];0.85[YRI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2160199	0.84[CEU][hapmap]
rs2540200	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2540247	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2540248	0.86[EUR][1000 genomes]
rs2540249	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2540250	0.82[EUR][1000 genomes]
rs2540251	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2540252	0.82[EUR][1000 genomes]
rs2540255	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2716682	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2716683	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2716684	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2716686	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2716687	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2716688	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2716690	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2716691	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2716692	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2716693	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2716694	1.00[CEU][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2716732	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2716737	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2716738	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4670954	0.89[EUR][1000 genomes]
rs6707177	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs917964	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs949812	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs949813	1.00[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873889	chr2:39830183-39950482	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv833870	chr2:39837022-40026024	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833881	chr2:39914558-40067256	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39907600-39922200	Weak transcription	HSMM	muscle
2	chr2:39914200-39926800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:39914400-39923400	Weak transcription	Fetal Brain Male	brain
4	chr2:39917200-39919800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:39917600-39922600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:39917600-39923200	Weak transcription	Aorta	Aorta
7	chr2:39918800-39921600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links