Variant report

Variant	rs6711403
Chromosome Location	chr2:31443741-31443742
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10186955	0.83[ASN][1000 genomes]
rs10199433	0.83[ASN][1000 genomes]
rs10210276	0.83[ASN][1000 genomes]
rs11124254	0.83[ASN][1000 genomes]
rs11691586	0.83[ASN][1000 genomes]
rs11691591	0.83[ASN][1000 genomes]
rs13383566	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13386745	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13386850	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13387073	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13408922	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13419334	0.91[ASN][1000 genomes]
rs13423140	1.00[JPT][hapmap]
rs13423321	1.00[JPT][hapmap]
rs28406984	0.91[ASN][1000 genomes]
rs28464710	0.91[ASN][1000 genomes]
rs28540753	0.91[ASN][1000 genomes]
rs4951972	0.83[ASN][1000 genomes]
rs4951973	0.83[ASN][1000 genomes]
rs4952063	0.83[ASN][1000 genomes]
rs4952064	0.83[ASN][1000 genomes]
rs4952065	0.83[ASN][1000 genomes]
rs4952066	0.83[ASN][1000 genomes]
rs4952067	0.83[ASN][1000 genomes]
rs55979456	0.81[ASN][1000 genomes]
rs56238301	0.83[ASN][1000 genomes]
rs6709366	1.00[JPT][hapmap];0.80[YRI][hapmap]
rs6709482	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.91[ASN][1000 genomes]
rs6711677	0.83[ASN][1000 genomes]
rs6726620	0.83[ASN][1000 genomes]
rs6755194	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv430635	chr2:31420415-31464385	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1009712	chr2:31424588-31468364	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1000416	chr2:31424588-31470845	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv581268	chr2:31425783-31467079	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv1001299	chr2:31428030-31464385	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv430646	chr2:31428030-31464385	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31436800-31446200	Enhancers	Primary B cells from cord blood	blood
2	chr2:31436800-31447400	Enhancers	Primary hematopoietic stem cells	blood
3	chr2:31436800-31447400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:31441200-31443800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr2:31441200-31449400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:31442400-31444400	Weak transcription	Fetal Heart	heart
7	chr2:31442600-31444200	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr2:31442600-31444400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr2:31442600-31444600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:31442600-31446400	Enhancers	Primary B cells from peripheral blood	blood
11	chr2:31442600-31447000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr2:31443000-31444400	Weak transcription	Fetal Thymus	thymus
13	chr2:31443000-31445400	Enhancers	GM12878-XiMat	blood
14	chr2:31443000-31446000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr2:31443400-31444200	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr2:31443400-31444400	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr2:31443400-31449800	Weak transcription	Esophagus	oesophagus

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