Variant report

Variant	rs67128820
Chromosome Location	chr3:143527157-143527158
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11719892	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13066023	0.80[EUR][1000 genomes]
rs1868183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56300534	0.81[EUR][1000 genomes]
rs6802122	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv3418674	chr3:143457005-143558357	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1009935	chr3:143497700-143610852	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1001076	chr3:143513526-143547076	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv536747	chr3:143513526-143547076	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143512000-143529200	Weak transcription	Primary B cells from cord blood	blood
2	chr3:143513600-143533600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr3:143514000-143527400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr3:143514200-143544200	Weak transcription	Primary T cells from cord blood	blood
5	chr3:143524200-143533200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr3:143525400-143527400	Weak transcription	Fetal Lung	lung
7	chr3:143525400-143529600	Weak transcription	Primary B cells from peripheral blood	blood
8	chr3:143525800-143527200	Enhancers	NHLF	lung
9	chr3:143525800-143528800	Enhancers	Fetal Muscle Leg	muscle
10	chr3:143525800-143530800	Enhancers	Fetal Stomach	stomach
11	chr3:143526000-143527400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:143526000-143530800	Weak transcription	Small Intestine	intestine
13	chr3:143526200-143528000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr3:143526200-143528000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:143526200-143528600	Weak transcription	Brain Substantia Nigra	brain
16	chr3:143526200-143530400	Enhancers	Colon Smooth Muscle	Colon
17	chr3:143526400-143527200	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr3:143526400-143531200	Weak transcription	Spleen	Spleen
19	chr3:143526800-143527800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:143526800-143531000	Enhancers	NHDF-Ad	bronchial
21	chr3:143526800-143533000	Weak transcription	Right Atrium	heart
22	chr3:143527000-143528000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr3:143527000-143528000	Weak transcription	Ovary	ovary

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