Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10189040	0.82[AMR][1000 genomes]
rs10490014	0.86[ASN][1000 genomes]
rs10929319	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11563060	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11563216	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2108809	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2215173	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2362292	0.81[AMR][1000 genomes]
rs28953468	0.88[ASN][1000 genomes]
rs4663988	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4663990	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6711120	0.82[AMR][1000 genomes]
rs6712540	0.83[AMR][1000 genomes]
rs6738375	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6740118	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs758275	0.82[AMR][1000 genomes]
rs758276	0.81[AMR][1000 genomes]
rs7597012	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs887065	0.82[EUR][1000 genomes]
rs917435	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234849400-234883400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:234849600-234873800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:234862600-234882200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:234863000-234882200	Weak transcription	Cortex derived primary cultured neurospheres	brain

Quick Search: