Variant report

Variant	rs671333
Chromosome Location	chr11:100840492-100840493
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs540089	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs569270	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs581468	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs608149	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs654593	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs688146	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100800200-100846600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:100807800-100844600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:100808000-100846600	Weak transcription	Ovary	ovary
4	chr11:100810000-100852200	Weak transcription	Small Intestine	intestine
5	chr11:100810400-100845000	Weak transcription	Primary B cells from cord blood	blood
6	chr11:100810600-100848400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr11:100812000-100841000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:100813000-100848600	Weak transcription	A549	lung
9	chr11:100813200-100841400	Weak transcription	Fetal Stomach	stomach
10	chr11:100813200-100846600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr11:100820400-100841400	Weak transcription	Right Ventricle	heart
12	chr11:100820400-100847000	Weak transcription	Fetal Kidney	kidney
13	chr11:100827400-100846600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:100828400-100845400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr11:100828600-100846400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr11:100828800-100849400	Weak transcription	NHLF	lung
17	chr11:100829000-100849400	Weak transcription	HMEC	breast
18	chr11:100829200-100846800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr11:100829600-100841400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr11:100829600-100849400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr11:100830000-100847600	Weak transcription	Psoas Muscle	Psoas
22	chr11:100830600-100858200	Weak transcription	Colonic Mucosa	Colon
23	chr11:100832200-100849600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:100834000-100847400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr11:100834200-100842800	Weak transcription	HSMM	muscle
26	chr11:100834400-100844600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:100834400-100847000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr11:100834400-100847200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:100834400-100851600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:100834800-100847200	Weak transcription	Stomach Mucosa	stomach
31	chr11:100835400-100845200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr11:100835600-100840800	Weak transcription	Fetal Heart	heart
33	chr11:100835600-100846600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr11:100835800-100846600	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr11:100836400-100840800	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr11:100836400-100841000	Weak transcription	Fetal Muscle Leg	muscle
37	chr11:100836400-100841200	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr11:100836400-100844600	Weak transcription	Duodenum Mucosa	Duodenum
39	chr11:100836400-100846200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr11:100836600-100840600	Weak transcription	Fetal Muscle Trunk	muscle
41	chr11:100836600-100840800	Weak transcription	Left Ventricle	heart
42	chr11:100836600-100844600	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr11:100836600-100846600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:100836600-100846600	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr11:100837000-100841200	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr11:100837200-100840600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr11:100838000-100844000	Weak transcription	Placenta	Placenta
48	chr11:100838800-100840800	Weak transcription	Fetal Intestine Small	intestine
49	chr11:100838800-100846600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr11:100839000-100840600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

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