Variant report

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10113988	0.86[AMR][1000 genomes]
rs10117175	0.86[AMR][1000 genomes]
rs10121939	0.86[AMR][1000 genomes]
rs10156478	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10989422	0.86[AMR][1000 genomes]
rs10989423	0.85[AMR][1000 genomes]
rs10989424	0.85[AMR][1000 genomes]
rs10989425	0.87[AMR][1000 genomes]
rs10989426	0.85[AMR][1000 genomes]
rs12336617	0.85[AMR][1000 genomes]
rs12336728	0.86[AMR][1000 genomes]
rs12338716	0.85[AMR][1000 genomes]
rs12339921	0.85[AMR][1000 genomes]
rs12339994	0.86[AMR][1000 genomes]
rs12342841	0.85[AMR][1000 genomes]
rs12344631	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12345075	0.85[AMR][1000 genomes]
rs12345440	0.86[AMR][1000 genomes]
rs12346158	0.85[AMR][1000 genomes]
rs12346223	0.85[AMR][1000 genomes]
rs12346256	0.85[AMR][1000 genomes]
rs12347855	0.86[AMR][1000 genomes]
rs12349128	0.86[AMR][1000 genomes]
rs12350583	0.85[AMR][1000 genomes]
rs12351067	0.83[AMR][1000 genomes]
rs12352151	0.86[AMR][1000 genomes]
rs12353249	0.86[AMR][1000 genomes]
rs12685239	0.85[AMR][1000 genomes]
rs12686592	0.83[AMR][1000 genomes]
rs1431477	0.83[AMR][1000 genomes]
rs16920038	0.86[AMR][1000 genomes]
rs16920055	0.83[AMR][1000 genomes]
rs2116285	0.86[AMR][1000 genomes]
rs57056311	0.86[AMR][1000 genomes]
rs58661374	0.85[AMR][1000 genomes]
rs61342570	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61654883	0.85[AMR][1000 genomes]
rs7029916	0.86[AMR][1000 genomes]
rs735847	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831671	chr9:103858107-104020816	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv948791	chr9:103893030-103964650	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103928400-103930600	Enhancers	Brain Hippocampus Middle	brain
2	chr9:103928600-103930600	Enhancers	Brain Cingulate Gyrus	brain
3	chr9:103929000-103930200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr9:103929000-103930200	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr9:103929000-103930200	Enhancers	Brain Substantia Nigra	brain
6	chr9:103929000-103930200	Enhancers	Fetal Brain Female	brain
7	chr9:103929000-103930600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr9:103929000-103930600	Enhancers	Brain Angular Gyrus	brain
9	chr9:103929000-103930800	Enhancers	Brain Anterior Caudate	brain
10	chr9:103929000-103931200	Enhancers	HepG2	liver
11	chr9:103929200-103930200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr9:103929200-103930800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr9:103929800-103930800	Enhancers	Pancreatic Islets	Pancreatic Islet

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