Variant report

Variant	rs6714112
Chromosome Location	chr2:36905013-36905014
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6716934	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6759391	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010985	chr2:36707157-36942066	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv535642	chr2:36707157-36942066	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv1007757	chr2:36838387-37011384	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv535643	chr2:36838387-37011384	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv963871	chr2:36896580-36913813	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6714112	STRN	cis	cerebellum	SCAN
rs6714112	VIT	cis	brain	seeQTL

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36903200-36905200	Enhancers	Primary T cells from cord blood	blood
2	chr2:36903200-36905400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr2:36903400-36905200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr2:36904000-36905200	Enhancers	Thymus	Thymus
5	chr2:36904000-36905600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr2:36904000-36905600	Enhancers	Fetal Thymus	thymus
7	chr2:36904000-36905800	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr2:36904000-36905800	Enhancers	Primary hematopoietic stem cells	blood
9	chr2:36904200-36905600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr2:36904200-36905800	Enhancers	HUVEC	blood vessel
11	chr2:36904600-36905400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr2:36904600-36905600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr2:36904600-36905600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr2:36904600-36905600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr2:36904600-36905600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr2:36904800-36905200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr2:36905000-36905200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
18	chr2:36905000-36905200	Enhancers	Fetal Lung	lung
19	chr2:36905000-36905400	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr2:36905000-36905400	Enhancers	NHLF	lung
21	chr2:36905000-36905600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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