Variant report

Variant	rs671493
Chromosome Location	chr11:107306812-107306813
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1046094	0.82[EUR][1000 genomes]
rs1046095	0.82[EUR][1000 genomes]
rs10502087	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10749896	0.82[EUR][1000 genomes]
rs10749900	0.82[EUR][1000 genomes]
rs10749901	0.82[EUR][1000 genomes]
rs10789605	0.86[EUR][1000 genomes]
rs10789606	0.86[EUR][1000 genomes]
rs10789607	0.82[EUR][1000 genomes]
rs10789608	0.82[EUR][1000 genomes]
rs10789611	0.82[EUR][1000 genomes]
rs10789612	0.82[EUR][1000 genomes]
rs10789613	0.82[EUR][1000 genomes]
rs10789615	0.82[EUR][1000 genomes]
rs10789616	0.82[EUR][1000 genomes]
rs10789617	0.80[EUR][1000 genomes]
rs10789618	0.80[EUR][1000 genomes]
rs10789621	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10890704	0.88[EUR][1000 genomes]
rs10890705	0.82[EUR][1000 genomes]
rs10890707	0.82[EUR][1000 genomes]
rs10890708	0.82[EUR][1000 genomes]
rs10890709	0.81[EUR][1000 genomes]
rs10890712	0.81[EUR][1000 genomes]
rs10890715	0.81[EUR][1000 genomes]
rs10890716	0.82[EUR][1000 genomes]
rs10890718	0.87[EUR][1000 genomes]
rs10890721	0.89[EUR][1000 genomes]
rs10890723	0.83[ASN][1000 genomes]
rs11212153	0.81[EUR][1000 genomes]
rs11212156	0.88[EUR][1000 genomes]
rs11212157	0.82[EUR][1000 genomes]
rs11212158	0.82[EUR][1000 genomes]
rs11212159	0.82[EUR][1000 genomes]
rs11212160	0.82[EUR][1000 genomes]
rs11212162	0.88[EUR][1000 genomes]
rs11212164	0.82[EUR][1000 genomes]
rs11212173	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11212175	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11212177	0.88[ASN][1000 genomes]
rs11212179	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11212180	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11212181	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11212182	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11212197	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11212206	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11212207	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11602033	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11607304	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12146472	0.81[EUR][1000 genomes]
rs12146473	0.82[EUR][1000 genomes]
rs12270655	0.80[EUR][1000 genomes]
rs12285491	0.84[ASN][1000 genomes]
rs12286342	0.82[EUR][1000 genomes]
rs12286915	0.84[ASN][1000 genomes]
rs1242141	0.82[AFR][1000 genomes]
rs1490945	0.82[EUR][1000 genomes]
rs17106875	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2046903	0.82[EUR][1000 genomes]
rs2161965	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2356280	0.88[ASN][1000 genomes]
rs3758911	0.82[EUR][1000 genomes]
rs4343000	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4387327	0.82[EUR][1000 genomes]
rs4576794	0.88[ASN][1000 genomes]
rs517240	0.80[AFR][1000 genomes]
rs55837508	0.82[EUR][1000 genomes]
rs56393657	0.84[ASN][1000 genomes]
rs588921	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs590699	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6421541	0.86[AFR][1000 genomes]
rs655448	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6588964	0.88[EUR][1000 genomes]
rs6588965	0.81[EUR][1000 genomes]
rs687991	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72990438	0.86[ASN][1000 genomes]
rs72990443	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7350479	0.84[ASN][1000 genomes]
rs7358296	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs999984	0.87[EUR][1000 genomes]
rs999985	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898365	chr11:106944975-107430300	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv898366	chr11:106944975-107433835	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv898367	chr11:106944975-107443420	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv898369	chr11:106958304-107443420	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv898370	chr11:107027991-107430300	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv898372	chr11:107049968-107433835	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1038368	chr11:107116577-107664181	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv541163	chr11:107116577-107664181	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv898373	chr11:107124903-107433835	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv832261	chr11:107145901-107321562	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv2756363	chr11:107189790-107376790	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
12	nsv556376	chr11:107250851-107486598	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv972969	chr11:107299401-107307004	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv898375	chr11:107299631-107365191	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	nsv898376	chr11:107299631-107443420	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107241600-107327800	Weak transcription	HSMMtube	muscle
2	chr11:107252600-107323800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:107255000-107327600	Weak transcription	Fetal Heart	heart
4	chr11:107256600-107327600	Weak transcription	NHDF-Ad	bronchial
5	chr11:107258800-107324200	Weak transcription	Small Intestine	intestine
6	chr11:107259600-107323400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr11:107261600-107310200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr11:107262200-107324000	Weak transcription	Pancreas	Pancrea
9	chr11:107263200-107309400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:107263200-107310200	Weak transcription	Psoas Muscle	Psoas
11	chr11:107263200-107310400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:107263600-107308200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr11:107263600-107309400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:107263600-107309400	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr11:107263600-107310600	Weak transcription	Brain Angular Gyrus	brain
16	chr11:107268600-107312200	Weak transcription	K562	blood
17	chr11:107268600-107323400	Weak transcription	Gastric	stomach
18	chr11:107268800-107309400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:107268800-107309400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:107269000-107324600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr11:107270000-107312400	Weak transcription	Brain Germinal Matrix	brain
22	chr11:107272600-107312600	Weak transcription	Fetal Brain Female	brain
23	chr11:107274400-107312600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr11:107274600-107308800	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr11:107274600-107312600	Weak transcription	Lung	lung
26	chr11:107274600-107323400	Weak transcription	Esophagus	oesophagus
27	chr11:107275400-107309400	Weak transcription	Fetal Stomach	stomach
28	chr11:107275400-107309400	Weak transcription	Right Ventricle	heart
29	chr11:107275400-107309400	Weak transcription	Spleen	Spleen
30	chr11:107275600-107314800	Weak transcription	NHEK	skin
31	chr11:107275800-107309400	Weak transcription	Thymus	Thymus
32	chr11:107278000-107309400	Weak transcription	HUVEC	blood vessel
33	chr11:107281200-107308800	Weak transcription	Brain Anterior Caudate	brain
34	chr11:107281600-107308600	Weak transcription	Fetal Intestine Large	intestine
35	chr11:107281800-107309400	Weak transcription	Fetal Intestine Small	intestine
36	chr11:107282000-107309400	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr11:107284400-107309400	Weak transcription	Aorta	Aorta
38	chr11:107284400-107309400	Weak transcription	Ovary	ovary
39	chr11:107284400-107309600	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr11:107284800-107308600	Weak transcription	GM12878-XiMat	blood
41	chr11:107284800-107309400	Weak transcription	Brain Hippocampus Middle	brain
42	chr11:107286200-107308600	Weak transcription	Placenta	Placenta
43	chr11:107286600-107309400	Weak transcription	Left Ventricle	heart
44	chr11:107286600-107322800	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr11:107286800-107309400	Weak transcription	Fetal Muscle Leg	muscle
46	chr11:107290200-107308200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr11:107291200-107309400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr11:107291400-107324000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr11:107292800-107327600	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr11:107294200-107317800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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