Variant report

Variant	rs6714936
Chromosome Location	chr2:177623339-177623340
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11889984	0.81[TSI][hapmap]
rs12618099	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs1533302	0.89[ASN][1000 genomes]
rs1606595	0.81[EUR][1000 genomes]
rs3731797	0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs3754988	0.91[ASN][1000 genomes]
rs4894196	0.85[CHB][hapmap];0.90[CHD][hapmap]
rs4894197	0.81[TSI][hapmap]
rs6705679	0.85[CHB][hapmap];0.90[CHD][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs6706063	0.81[TSI][hapmap]
rs6758766	0.81[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527737	chr2:177538266-177692572	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv583686	chr2:177538266-177692572	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1006500	chr2:177548521-177707097	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6714936	LOC100130691	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177616600-177627000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:177616800-177627000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr2:177621200-177626800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr2:177621200-177627000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr2:177621400-177626200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr2:177621400-177627200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr2:177622600-177623400	Enhancers	Right Atrium	heart
8	chr2:177622600-177628600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr2:177622800-177628600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:177623000-177628400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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