Variant report

Variant	rs67149912
Chromosome Location	chr15:57204768-57204769
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57203945..57205768-chr15:57207665..57209993,2	MCF-7	breast:
2	chr15:57204163..57205787-chr15:57210257..57213080,2	K562	blood:

Variant related genes	Relation type
ENSG00000140262	Chromatin interaction
ENSG00000137871	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12324092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12901355	0.89[ASN][1000 genomes]
rs28616268	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28639536	0.90[ASN][1000 genomes]
rs28677775	0.80[EUR][1000 genomes]
rs28756149	0.84[EUR][1000 genomes]
rs28814080	0.82[EUR][1000 genomes]
rs28856894	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7164655	0.84[EUR][1000 genomes]
rs7178030	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8040708	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57180200-57208000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr15:57182000-57209200	Weak transcription	Fetal Stomach	stomach
3	chr15:57191800-57208000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:57194400-57208600	Weak transcription	Left Ventricle	heart
5	chr15:57196000-57205800	Weak transcription	HSMMtube	muscle
6	chr15:57196200-57207800	Weak transcription	Fetal Brain Female	brain
7	chr15:57197600-57207200	Weak transcription	Fetal Muscle Leg	muscle
8	chr15:57199000-57209000	Weak transcription	Brain Germinal Matrix	brain
9	chr15:57199200-57209000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr15:57199400-57209200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr15:57199600-57209000	Weak transcription	Brain Hippocampus Middle	brain
12	chr15:57199600-57209200	Weak transcription	Psoas Muscle	Psoas
13	chr15:57200000-57208000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr15:57200000-57209000	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr15:57200000-57209000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr15:57200200-57205400	Weak transcription	Dnd41	blood
17	chr15:57200200-57205800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr15:57200200-57209000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr15:57200200-57209000	Weak transcription	Liver	Liver
20	chr15:57200200-57209200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr15:57200200-57209200	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr15:57200200-57209200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr15:57200400-57207600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr15:57200400-57209000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr15:57200400-57209000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr15:57200400-57209200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr15:57201800-57208000	Weak transcription	Fetal Lung	lung
28	chr15:57202600-57209600	Weak transcription	NH-A	brain
29	chr15:57203000-57209000	Weak transcription	Brain Angular Gyrus	brain
30	chr15:57203200-57207800	Weak transcription	Brain Cingulate Gyrus	brain
31	chr15:57203200-57208000	Weak transcription	Ovary	ovary
32	chr15:57203200-57208200	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr15:57203400-57208800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr15:57203400-57209000	Weak transcription	Brain Substantia Nigra	brain
35	chr15:57203400-57209200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr15:57204000-57204800	Enhancers	Thymus	Thymus
37	chr15:57204200-57205000	Enhancers	Fetal Thymus	thymus
38	chr15:57204600-57208400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links