Variant report

Variant	rs671551
Chromosome Location	chr6:119443695-119443696
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12216301	0.95[ASN][1000 genomes]
rs612607	0.92[ASN][1000 genomes]
rs632145	0.94[ASN][1000 genomes]
rs9374781	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv2524990	chr6:119443510-119444996	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs671551	MCM9	cis	brain	BrainEAC

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119439200-119448400	Weak transcription	K562	blood
2	chr6:119440400-119444000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:119440400-119445400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:119440600-119445400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:119440600-119448400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:119440800-119445600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:119441400-119449200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:119441400-119450200	Weak transcription	NH-A	brain
9	chr6:119441800-119450400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:119442200-119443800	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr6:119443000-119444200	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr6:119443200-119444000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:119443200-119444800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:119443400-119444000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:119443600-119443800	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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