Variant report

Variant	rs6715643
Chromosome Location	chr2:114578252-114578253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11903680	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4292100	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4389338	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4450608	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62170141	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62170142	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62170143	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62170145	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62170146	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62170148	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66867371	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6705329	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72835407	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7589706	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs6715643	ACTR3	Cis_1M	lymphoblastoid	RTeQTL
rs6715643	DDX11L2	cis	Whole Blood	GTEx
rs6715643	SLC35F5	cis	Thyroid	GTEx
rs6715643	RPL23AP7	cis	Artery Tibial	GTEx
rs6715643	DDX11L2	cis	Esophagus Mucosa	GTEx
rs6715643	DDX11L2	cis	Adipose Subcutaneous	GTEx
rs6715643	RPL23AP7	cis	Whole Blood	GTEx
rs6715643	DDX11L2	cis	lung	GTEx

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114568200-114586000	Weak transcription	Primary T cells from cord blood	blood
2	chr2:114574200-114603600	Weak transcription	Primary B cells from cord blood	blood
3	chr2:114576200-114578800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:114576400-114579200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:114576400-114580000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr2:114576400-114582800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:114576400-114588400	Weak transcription	Esophagus	oesophagus
8	chr2:114577000-114579600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr2:114577000-114579800	Weak transcription	NHDF-Ad	bronchial
10	chr2:114577000-114583800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr2:114577200-114579400	Weak transcription	K562	blood
12	chr2:114577200-114579600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:114577200-114582200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr2:114577200-114584600	Weak transcription	Fetal Intestine Small	intestine
15	chr2:114578000-114581400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:114578200-114579400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr2:114578200-114579400	Weak transcription	Ovary	ovary
18	chr2:114578200-114582200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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