Variant report

Variant	rs6716774
Chromosome Location	chr2:205948338-205948339
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10187682	0.82[EUR][1000 genomes]
rs10207227	0.85[EUR][1000 genomes]
rs11677135	0.82[EUR][1000 genomes]
rs13389502	0.85[EUR][1000 genomes]
rs2060399	0.85[EUR][1000 genomes]
rs6716363	0.82[EUR][1000 genomes]
rs6731783	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7566341	0.83[EUR][1000 genomes]
rs985164	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv16739	chr2:205898770-206127984	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205941600-205950600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:205942200-205950800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:205945600-205949800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr2:205945600-205956600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr2:205945800-205950000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr2:205947200-205948400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr2:205947800-205948400	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr2:205947800-205948800	Enhancers	Primary T cells from cord blood	blood
9	chr2:205948000-205948400	Enhancers	Primary T helper cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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