Variant report

Variant	rs67170531
Chromosome Location	chr7:79788975-79788976
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:79787757..79790479-chr7:79794943..79796781,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10268519	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10268773	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13242552	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17806203	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28435776	0.88[EUR][1000 genomes]
rs35118140	0.88[EUR][1000 genomes]
rs35334177	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731252	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66895505	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67783451	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67854907	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79776200-79796200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr7:79777600-79791000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:79780400-79791400	Weak transcription	Psoas Muscle	Psoas
4	chr7:79781200-79803200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr7:79781600-79789000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:79781600-79794200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr7:79781600-79795200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:79781600-79797000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr7:79783200-79794000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr7:79783600-79789600	Weak transcription	Left Ventricle	heart
11	chr7:79783600-79791200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr7:79783800-79806600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:79784000-79792000	Weak transcription	Fetal Kidney	kidney
14	chr7:79784600-79790600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr7:79784800-79791400	Enhancers	Brain Substantia Nigra	brain
16	chr7:79785200-79789600	Weak transcription	Colon Smooth Muscle	Colon
17	chr7:79785200-79791200	Weak transcription	NHDF-Ad	bronchial
18	chr7:79785600-79794400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr7:79786200-79791800	Weak transcription	Fetal Brain Male	brain
20	chr7:79786200-79794200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr7:79786200-79796600	Weak transcription	NHEK	skin
22	chr7:79786200-79799600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr7:79786400-79790600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr7:79786600-79789200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr7:79786800-79790000	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr7:79787600-79790600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr7:79788000-79795200	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr7:79788200-79792200	Enhancers	Adipose Nuclei	Adipose
29	chr7:79788400-79789000	Enhancers	Brain Germinal Matrix	brain
30	chr7:79788400-79791200	Weak transcription	Fetal Lung	lung
31	chr7:79788400-79791800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr7:79788400-79792600	Weak transcription	Brain Angular Gyrus	brain
33	chr7:79788600-79789800	Enhancers	Liver	Liver
34	chr7:79788600-79791200	Weak transcription	Gastric	stomach
35	chr7:79788600-79799000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr7:79788600-79799800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr7:79788800-79789400	Enhancers	A549	lung
38	chr7:79788800-79789600	Weak transcription	Brain Hippocampus Middle	brain
39	chr7:79788800-79789800	Enhancers	Brain Cingulate Gyrus	brain
40	chr7:79788800-79791200	Weak transcription	Ovary	ovary
41	chr7:79788800-79791400	Enhancers	Pancreatic Islets	Pancreatic Islet
42	chr7:79788800-79794600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr7:79788800-79796400	Weak transcription	Brain Anterior Caudate	brain

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