Variant report

Variant	rs671710
Chromosome Location	chr1:158168915-158168916
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CD1B-1	chr1:158167712-158169625	ENSG00000176320

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs12040592	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12726365	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1622565	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1622690	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1633135	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1633136	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1633137	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1633138	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1633141	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1633142	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1633143	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1690782	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1690783	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1748377	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1748378	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1748379	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1748380	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1748381	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1748382	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1748383	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1748386	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1748387	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1748395	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2518477	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3018315	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs33998633	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34261126	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34768799	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs35043390	0.84[ASN][1000 genomes]
rs35200730	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs35717739	0.84[ASN][1000 genomes]
rs35860011	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs36120073	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs374686	0.82[ASN][1000 genomes]
rs379522	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs380015	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs383819	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs384414	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs392249	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs394823	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs401904	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs402699	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs406361	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs407309	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs411088	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs412713	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs421484	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs437721	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs440862	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs440955	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs442076	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs449838	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs454825	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs590018	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs594364	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs594840	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs607550	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs607948	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs607982	0.82[ASN][1000 genomes]
rs608279	0.82[ASN][1000 genomes]
rs620699	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs621880	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs622707	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs651780	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs652269	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs652786	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6677683	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6690078	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs670766	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs690734	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs690837	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs690984	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs691174	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs691175	0.84[ASN][1000 genomes]
rs691240	0.82[ASN][1000 genomes]
rs691306	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs691314	0.83[ASN][1000 genomes]
rs691318	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs691368	0.84[ASN][1000 genomes]
rs691935	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs691983	0.84[ASN][1000 genomes]
rs692052	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs692564	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs71515589	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999542	chr1:158015715-158368132	Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872480	chr1:158153526-158450238	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv13585	chr1:158159222-158214160	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1814455	chr1:158160528-158200312	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv508626	chr1:158161932-158242158	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv527619	chr1:158168563-158170546	Active TSS Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158164000-158172800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr1:158166000-158169800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:158167200-158169200	Genic enhancers	Dnd41	blood
4	chr1:158167200-158169400	Strong transcription	Fetal Thymus	thymus
5	chr1:158167200-158170400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr1:158168000-158172800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr1:158168800-158169600	Strong transcription	Thymus	Thymus

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