Variant report

Variant	rs67176119
Chromosome Location	chr7:27890366-27890367
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11763207	0.94[EUR][1000 genomes]
rs13224500	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13237769	1.00[ASN][1000 genomes]
rs13238115	0.86[ASN][1000 genomes]
rs3823945	0.86[ASN][1000 genomes]
rs4455744	0.89[ASN][1000 genomes]
rs6946448	0.92[EUR][1000 genomes]
rs7785045	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7797980	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1028469	chr7:27767795-27939667	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2758109	chr7:27793616-27972869	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv2759520	chr7:27793616-27972869	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1018550	chr7:27844038-27925645	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27870600-27891800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:27875200-27913000	Weak transcription	Right Atrium	heart
3	chr7:27876200-27913000	Weak transcription	Fetal Heart	heart
4	chr7:27880000-27891600	Weak transcription	Osteobl	bone
5	chr7:27880400-27891000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:27880600-27903000	Weak transcription	Lung	lung
7	chr7:27880600-27913600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:27880800-27895600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr7:27880800-27896600	Weak transcription	Spleen	Spleen
10	chr7:27880800-27896800	Weak transcription	Gastric	stomach
11	chr7:27880800-27913200	Weak transcription	Aorta	Aorta
12	chr7:27881000-27905600	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr7:27881200-27895800	Weak transcription	Primary T cells from cord blood	blood
14	chr7:27881600-27895600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:27881800-27896600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr7:27882600-27895400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr7:27882800-27912000	Weak transcription	Brain Anterior Caudate	brain
18	chr7:27883600-27896000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr7:27883600-27903000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr7:27883800-27892000	Weak transcription	Fetal Stomach	stomach
21	chr7:27883800-27903000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr7:27884600-27895800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr7:27885200-27900400	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr7:27886400-27902000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr7:27888000-27895600	Weak transcription	Primary B cells from cord blood	blood
26	chr7:27889200-27895600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr7:27889200-27895800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr7:27889200-27912000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr7:27889800-27891600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr7:27890000-27891400	Strong transcription	Primary B cells from peripheral blood	blood

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