Variant report

Variant	rs6719157
Chromosome Location	chr2:41000297-41000298
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13395771	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13421032	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1456585	0.86[AMR][1000 genomes]
rs2192813	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs2192814	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs2192815	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs6719860	0.84[AMR][1000 genomes]
rs72953433	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72953434	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72953438	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72953439	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72953440	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72953443	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72953444	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72953447	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72953448	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73928269	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9677581	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873911	chr2:40423454-41161464	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv873917	chr2:40710953-41015998	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv528865	chr2:40805427-41218810	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv873927	chr2:40835285-41034225	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv470455	chr2:40835285-41059164	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv873928	chr2:40835285-41075134	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv873929	chr2:40835285-41180690	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv456441	chr2:40882402-41064824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv581514	chr2:40882402-41064824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv873933	chr2:40989061-41075134	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:41000200-41000800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:41000200-41000800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:41000200-41000800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:41000200-41000800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr2:41000200-41001000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr2:41000200-41001000	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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