Variant report

Variant	rs671919
Chromosome Location	chr1:75763491-75763492
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:75763247..75766702-chr1:75766779..75769918,3	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10518500	0.81[CEU][hapmap]
rs11806471	0.87[CEU][hapmap]
rs11809429	0.87[CEU][hapmap]
rs11811008	0.81[EUR][1000 genomes]
rs1249796	0.87[CEU][hapmap]
rs1249797	0.87[CEU][hapmap]
rs1249807	0.87[CEU][hapmap]
rs1443846	0.87[CEU][hapmap]
rs17096508	0.93[CEU][hapmap];0.86[LWK][hapmap];1.00[YRI][hapmap]
rs17096860	0.87[CEU][hapmap]
rs17096877	0.87[CEU][hapmap]
rs17584530	0.87[CEU][hapmap]
rs1778454	0.87[CEU][hapmap]
rs2083868	0.87[CEU][hapmap]
rs3845363	0.87[CEU][hapmap]
rs588830	0.86[ASW][hapmap];0.94[CEU][hapmap];0.91[LWK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs590301	0.94[CEU][hapmap];1.00[YRI][hapmap]
rs596515	0.93[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs598649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs604745	0.94[CEU][hapmap]
rs617196	0.86[ASW][hapmap];0.94[CEU][hapmap];0.91[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap]
rs625357	0.94[CEU][hapmap]
rs629615	0.94[CEU][hapmap]
rs632068	0.89[AFR][1000 genomes]
rs635184	0.94[CEU][hapmap];0.91[LWK][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap]
rs639028	0.93[CEU][hapmap];1.00[YRI][hapmap]
rs642923	0.94[CEU][hapmap];1.00[YRI][hapmap]
rs648869	0.94[CEU][hapmap];0.91[LWK][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap]
rs663620	0.86[ASW][hapmap];0.94[CEU][hapmap];0.91[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap]
rs664268	0.86[ASW][hapmap];0.94[CEU][hapmap];0.91[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap]
rs664593	0.87[CEU][hapmap];0.87[LWK][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap]
rs665545	0.93[CEU][hapmap];0.91[LWK][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap]
rs6657734	0.87[CEU][hapmap]
rs6676696	0.87[CEU][hapmap]
rs671533	0.87[CEU][hapmap]
rs675962	0.93[CEU][hapmap]
rs681689	0.93[CEU][hapmap];1.00[YRI][hapmap]
rs694025	0.86[ASW][hapmap];0.94[CEU][hapmap];0.91[LWK][hapmap];0.88[MKK][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3368999	chr1:75524762-75933220	Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1013952	chr1:75716654-75936048	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv535004	chr1:75716654-75936048	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv945903	chr1:75761528-75765315	Inactive region	Chromatin interactive region	n/a	n/a	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs671919	NEXN	cis	cerebellum	SCAN
rs671919	SLC44A5	cis	Esophagus Mucosa	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

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