Variant report

Variant	rs6719409
Chromosome Location	chr2:141825265-141825266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10168120	0.86[YRI][hapmap]
rs10190133	0.92[YRI][hapmap]
rs12477423	1.00[ASW][hapmap];0.95[LWK][hapmap];0.82[MKK][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes]
rs1357966	0.86[YRI][hapmap]
rs1473661	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs1473662	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1525584	0.86[YRI][hapmap]
rs1525585	0.85[YRI][hapmap]
rs1525588	0.86[YRI][hapmap]
rs16845479	1.00[CHB][hapmap]
rs1882643	0.81[YRI][hapmap]
rs1882644	0.86[YRI][hapmap]
rs1917701	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1922698	1.00[CHB][hapmap]
rs1922699	1.00[ASN][1000 genomes]
rs1922709	0.81[ASW][hapmap];0.81[AFR][1000 genomes]
rs1922710	0.90[ASW][hapmap];0.81[AFR][1000 genomes]
rs2380922	0.80[ASW][hapmap];1.00[CHB][hapmap]
rs3856355	0.95[YRI][hapmap]
rs4954689	0.86[YRI][hapmap]
rs4954690	0.86[YRI][hapmap]
rs4954886	1.00[CHB][hapmap]
rs4954887	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.95[TSI][hapmap]
rs62173718	0.92[ASN][1000 genomes]
rs6755234	0.90[ASW][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv817518	chr2:141714174-142287302	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv875211	chr2:141764693-141846346	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv875212	chr2:141796109-141877201	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv875213	chr2:141800473-141852429	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv875214	chr2:141800473-141866271	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv875215	chr2:141800473-141877201	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv875216	chr2:141800473-141905052	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv875217	chr2:141800473-141919943	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv875218	chr2:141800473-141925845	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1003799	chr2:141803314-142033675	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv875219	chr2:141803602-141877201	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv459563	chr2:141803602-141925075	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv583200	chr2:141803602-141925075	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv875220	chr2:141819422-141882963	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141825000-141825400	Enhancers	Brain Substantia Nigra	brain

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