Variant report

Variant	rs67198650
Chromosome Location	chr6:132651730-132651731
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10484483	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11968833	0.90[ASN][1000 genomes]
rs17061185	0.97[EUR][1000 genomes]
rs17637818	0.92[ASN][1000 genomes]
rs55777437	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59626829	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72994804	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886674	chr6:132613798-132694751	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132635600-132655000	Weak transcription	NH-A	brain
2	chr6:132637000-132652800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:132638800-132654800	Weak transcription	Fetal Kidney	kidney
4	chr6:132640400-132662200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:132644000-132657400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:132644400-132675400	Weak transcription	Fetal Lung	lung
7	chr6:132645000-132655000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:132648200-132654800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:132649200-132652000	Strong transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:132649800-132652400	Weak transcription	NHDF-Ad	bronchial
11	chr6:132651000-132653200	Enhancers	Placenta	Placenta
12	chr6:132651000-132655000	Weak transcription	Fetal Intestine Small	intestine
13	chr6:132651200-132652000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:132651200-132653200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:132651400-132652400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr6:132651600-132652000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:132651600-132652800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:132651600-132652800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:132651600-132653000	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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