Variant report

Variant	rs67203490
Chromosome Location	chr14:70794929-70794930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SYNJ2BP-1	chr14:70794883-70794947	NONHSAT037557

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10133282	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10136230	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10139500	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10142102	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10144588	0.81[EUR][1000 genomes]
rs10144818	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10144926	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10148586	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10150707	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10873230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11844845	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12588623	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2332415	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2332417	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2877657	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2877669	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28830860	0.94[ASN][1000 genomes]
rs4048519	1.00[EUR][1000 genomes]
rs4902815	0.83[ASN][1000 genomes]
rs55728800	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56977342	0.95[ASN][1000 genomes]
rs57495576	0.95[ASN][1000 genomes]
rs57535767	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58186506	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6573949	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66886776	0.81[ASN][1000 genomes]
rs7141636	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7141694	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7144478	0.83[ASN][1000 genomes]
rs7148445	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8005522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8014179	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8014459	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8016520	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9323536	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9630398	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70781200-70796800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr14:70783400-70799200	Weak transcription	NHEK	skin
3	chr14:70783600-70798600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:70784000-70801000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:70784200-70800600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr14:70784600-70798600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr14:70784800-70798800	Weak transcription	Gastric	stomach
8	chr14:70785400-70799200	Weak transcription	Stomach Mucosa	stomach
9	chr14:70785600-70799000	Weak transcription	Psoas Muscle	Psoas
10	chr14:70786000-70799200	Weak transcription	Pancreas	Pancrea
11	chr14:70788200-70813600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr14:70789000-70798600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr14:70789200-70798600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr14:70789400-70798600	Weak transcription	Fetal Brain Female	brain
15	chr14:70789400-70798600	Weak transcription	Fetal Stomach	stomach
16	chr14:70789400-70798600	Weak transcription	Spleen	Spleen
17	chr14:70789400-70798800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr14:70789400-70799000	Weak transcription	Right Ventricle	heart
19	chr14:70789800-70798800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr14:70790000-70797600	Weak transcription	NHDF-Ad	bronchial
21	chr14:70790000-70798600	Weak transcription	Thymus	Thymus
22	chr14:70790200-70798600	Weak transcription	Brain Cingulate Gyrus	brain
23	chr14:70790400-70795600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr14:70790400-70796600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr14:70790400-70799000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr14:70790400-70799200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr14:70790600-70796000	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr14:70790600-70798600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr14:70790600-70798800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr14:70790600-70799400	Weak transcription	Brain Anterior Caudate	brain
31	chr14:70790800-70795400	Strong transcription	Brain Germinal Matrix	brain
32	chr14:70790800-70795600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr14:70790800-70795600	Strong transcription	Liver	Liver
34	chr14:70790800-70796000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr14:70790800-70796200	Strong transcription	HSMM	muscle
36	chr14:70790800-70798600	Weak transcription	Esophagus	oesophagus
37	chr14:70791000-70795200	Strong transcription	Duodenum Smooth Muscle	Duodenum
38	chr14:70791000-70795400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr14:70791000-70795600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
40	chr14:70791000-70795600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr14:70791000-70795800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr14:70791000-70796200	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr14:70791000-70798800	Weak transcription	Colonic Mucosa	Colon
44	chr14:70791000-70799800	Weak transcription	Fetal Heart	heart
45	chr14:70791200-70795200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr14:70791200-70795400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr14:70791200-70795400	Strong transcription	Primary B cells from peripheral blood	blood
48	chr14:70791200-70795600	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr14:70791200-70795600	Strong transcription	Duodenum Mucosa	Duodenum
50	chr14:70791200-70795800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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