Variant report

Variant	rs6721754
Chromosome Location	chr2:20155113-20155114
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr2:20154923-20156455	A549	lung:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:20154448..20157008-chr2:20296736..20298879,2	MCF-7	breast:
2	chr2:20154616..20156310-chr2:20297424..20298664,25	K562	blood:
3	chr2:20155105..20156071-chr2:20490452..20491074,4	K562	blood:
4	chr2:20155021..20155807-chr2:20490528..20491423,2	MCF-7	breast:
5	chr2:20155113..20157301-chr2:20158694..20161163,3	K562	blood:
6	chr2:20154421..20157278-chr2:20295987..20298973,3	MCF-7	breast:
7	chr2:20154730..20157342-chr2:20251930..20254193,3	MCF-7	breast:

No data

Variant related genes	Relation type
WDR35	TF binding region

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10175236	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10175486	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10190645	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10203067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10211513	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11887799	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12328613	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12467740	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12615824	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1462754	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16987206	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2278528	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2304589	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28742930	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58978345	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6716854	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6717139	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6757734	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7560235	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527453	chr2:20109061-20160209	ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv1798392	chr2:20131079-20173255	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6721754	TTC32	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20102800-20173200	Weak transcription	Fetal Brain Male	brain
2	chr2:20117600-20188400	Weak transcription	Brain Angular Gyrus	brain
3	chr2:20127400-20167800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr2:20128400-20188400	Weak transcription	Colon Smooth Muscle	Colon
5	chr2:20128400-20189200	Weak transcription	Small Intestine	intestine
6	chr2:20129400-20184800	Weak transcription	Esophagus	oesophagus
7	chr2:20129600-20189000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr2:20130200-20189000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr2:20130400-20164600	Weak transcription	Lung	lung
10	chr2:20130400-20188800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:20130600-20161200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr2:20130600-20188800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr2:20131800-20189000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr2:20133600-20164800	Weak transcription	Gastric	stomach
15	chr2:20133600-20184800	Weak transcription	Psoas Muscle	Psoas
16	chr2:20133800-20173200	Weak transcription	NHEK	skin
17	chr2:20133800-20176800	Weak transcription	HMEC	breast
18	chr2:20134200-20168600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr2:20136400-20177000	Weak transcription	GM12878-XiMat	blood
20	chr2:20136400-20177200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr2:20136600-20171200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr2:20136600-20177200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr2:20136800-20171400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr2:20136800-20188800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr2:20136800-20189000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr2:20137600-20161000	Weak transcription	HSMMtube	muscle
27	chr2:20137600-20165200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr2:20137800-20161200	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr2:20137800-20165000	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr2:20138000-20165000	Weak transcription	Fetal Brain Female	brain
31	chr2:20138000-20177000	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr2:20138200-20164200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr2:20138200-20165000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr2:20138200-20165000	Weak transcription	Fetal Muscle Leg	muscle
35	chr2:20138200-20171400	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr2:20138200-20188800	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr2:20138400-20164400	Weak transcription	Stomach Smooth Muscle	stomach
38	chr2:20138400-20167800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr2:20138600-20165000	Weak transcription	Fetal Muscle Trunk	muscle
40	chr2:20138600-20165000	Weak transcription	Left Ventricle	heart
41	chr2:20138600-20165400	Weak transcription	Osteobl	bone
42	chr2:20138600-20184800	Weak transcription	Aorta	Aorta
43	chr2:20138800-20164800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr2:20138800-20165000	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr2:20138800-20165000	Weak transcription	Fetal Thymus	thymus
46	chr2:20141600-20163800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr2:20144600-20173200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr2:20144600-20173400	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr2:20144600-20173600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr2:20144800-20168600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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