Variant report

Variant	rs6725028
Chromosome Location	chr2:179826241-179826242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:179825079..179826748-chr2:179827040..179829506,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10930840	0.82[YRI][hapmap]
rs12468290	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12469182	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12993732	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6751992	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949133	chr2:179711376-180124327	Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv875455	chr2:179732845-179909467	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv583756	chr2:179758007-179843612	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1000545	chr2:179768359-179843612	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv875456	chr2:179775893-179896787	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv875457	chr2:179775893-179966804	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv875458	chr2:179780624-179966804	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1011538	chr2:179803786-179862194	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179770000-179848200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr2:179775600-179826400	Weak transcription	Pancreas	Pancrea
3	chr2:179802800-179829400	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr2:179803600-179827600	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr2:179804000-179831600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:179806800-179843600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr2:179812600-179839000	Weak transcription	HSMMtube	muscle
8	chr2:179814000-179828200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr2:179816600-179841200	Weak transcription	Right Ventricle	heart
10	chr2:179821000-179828200	Strong transcription	Primary T cells from cord blood	blood
11	chr2:179823000-179826400	Weak transcription	Thymus	Thymus
12	chr2:179824200-179826800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr2:179824400-179828600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr2:179824400-179829000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr2:179824600-179829000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr2:179825200-179828400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr2:179825400-179828800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr2:179825600-179827200	Weak transcription	Primary B cells from peripheral blood	blood
19	chr2:179825800-179826800	Enhancers	Fetal Heart	heart
20	chr2:179825800-179827800	Enhancers	Left Ventricle	heart
21	chr2:179826000-179827400	Weak transcription	Primary B cells from cord blood	blood
22	chr2:179826200-179830600	Weak transcription	Fetal Muscle Leg	muscle

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