Variant report

Variant	rs672503
Chromosome Location	chr11:102308874-102308875
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:102308446..102310865-chr11:102321993..102324516,2	MCF-7	breast:
2	chr11:102306119..102309748-chr11:102314696..102317060,3	K562	blood:
3	chr11:102306851..102309748-chr11:102315391..102317524,3	K562	blood:
4	chr11:102234586..102236532-chr11:102307428..102308974,2	K562	blood:

Variant related genes	Relation type
ENSG00000255337	Chromatin interaction
ENSG00000152558	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2509683	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4754845	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs546361	0.89[AMR][1000 genomes]
rs618571	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs670314	0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3514195	chr11:102118479-102348362	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv3514197	chr11:102118479-102348362	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1035567	chr11:102264516-102431607	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv898334	chr11:102272884-102353192	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102293000-102316000	Weak transcription	HUVEC	blood vessel
2	chr11:102298200-102316000	Weak transcription	Fetal Lung	lung
3	chr11:102300400-102319800	Weak transcription	Fetal Kidney	kidney
4	chr11:102300800-102316600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:102300800-102320600	Weak transcription	Ovary	ovary
6	chr11:102301200-102320800	Weak transcription	Left Ventricle	heart
7	chr11:102301400-102316200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr11:102301400-102316600	Weak transcription	NHLF	lung
9	chr11:102301400-102319800	Weak transcription	Pancreas	Pancrea
10	chr11:102301400-102320600	Weak transcription	Right Ventricle	heart
11	chr11:102301400-102320800	Weak transcription	Adipose Nuclei	Adipose
12	chr11:102301400-102321000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr11:102301400-102322400	Weak transcription	Spleen	Spleen
14	chr11:102301600-102309000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr11:102301600-102316600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr11:102301800-102309200	Weak transcription	Colon Smooth Muscle	Colon
17	chr11:102301800-102309600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:102301800-102316800	Weak transcription	HSMMtube	muscle
19	chr11:102302400-102309600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr11:102302400-102309600	ZNF genes & repeats	GM12878-XiMat	blood
21	chr11:102302400-102318000	Weak transcription	Small Intestine	intestine
22	chr11:102303800-102309000	Strong transcription	HepG2	liver
23	chr11:102304000-102309000	Weak transcription	Fetal Intestine Large	intestine
24	chr11:102304000-102309400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:102304000-102309400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr11:102304000-102309400	Weak transcription	Colonic Mucosa	Colon
27	chr11:102304000-102309400	Weak transcription	Gastric	stomach
28	chr11:102304000-102316400	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr11:102304000-102316600	Weak transcription	HMEC	breast
30	chr11:102304000-102317000	Weak transcription	NH-A	brain
31	chr11:102304000-102320600	Weak transcription	Fetal Brain Female	brain
32	chr11:102304000-102322400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr11:102304200-102309200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr11:102304200-102309400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr11:102304200-102309400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr11:102304200-102309400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr11:102304200-102322000	Weak transcription	Fetal Muscle Trunk	muscle
38	chr11:102304400-102316000	Weak transcription	NHEK	skin
39	chr11:102304600-102309400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:102304600-102309600	Strong transcription	Primary hematopoietic stem cells	blood
41	chr11:102304600-102310200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr11:102304800-102309800	Strong transcription	Primary B cells from peripheral blood	blood
43	chr11:102305000-102310200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr11:102306400-102309000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr11:102306400-102309600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr11:102306400-102310200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
47	chr11:102306600-102309000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr11:102306600-102309000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr11:102306600-102309000	Weak transcription	HSMM	muscle
50	chr11:102306600-102309200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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