Variant report

Variant	rs67258935
Chromosome Location	chr5:124827164-124827165
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1026448	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11742189	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13175820	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13186218	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13340392	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17152867	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17152869	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2061328	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6880987	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6883648	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030992	chr5:124708549-125391503	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv537892	chr5:124708549-125391503	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv882824	chr5:124789500-124875058	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124821800-124828800	Weak transcription	Aorta	Aorta
2	chr5:124822600-124827400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:124822600-124827600	Weak transcription	Fetal Lung	lung
4	chr5:124822600-124827800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:124822600-124828800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr5:124822800-124833800	Weak transcription	Fetal Kidney	kidney
7	chr5:124823000-124827400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr5:124823200-124827200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr5:124823200-124827600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr5:124823200-124827600	Weak transcription	NHEK	skin
11	chr5:124823200-124827800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:124823200-124827800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr5:124823200-124827800	Weak transcription	Colon Smooth Muscle	Colon
14	chr5:124823400-124827600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr5:124823400-124827600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr5:124823400-124827600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr5:124823400-124827800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr5:124823400-124827800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr5:124823400-124827800	Weak transcription	Fetal Muscle Leg	muscle
20	chr5:124823400-124827800	Weak transcription	HMEC	breast
21	chr5:124823400-124827800	Weak transcription	Osteobl	bone
22	chr5:124823400-124832000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr5:124823400-124860400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr5:124823600-124827800	Weak transcription	Brain Anterior Caudate	brain
25	chr5:124823600-124828800	Weak transcription	Brain Hippocampus Middle	brain
26	chr5:124825200-124827400	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr5:124825200-124827800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr5:124825200-124833000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr5:124825400-124827600	Weak transcription	HSMMtube	muscle
30	chr5:124826200-124827800	Weak transcription	HSMM	muscle
31	chr5:124826200-124829000	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr5:124826600-124827200	Enhancers	Brain Germinal Matrix	brain
33	chr5:124827000-124827200	Enhancers	Brain Substantia Nigra	brain
34	chr5:124827000-124827800	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr5:124827000-124828200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr5:124827000-124828200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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