Variant report

Variant	rs67271885
Chromosome Location	chr12:86172866-86172867
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:86166924..86169171-chr12:86172853..86175025,2	K562	blood:
2	chr12:86166852..86169171-chr12:86172826..86175025,3	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11608717	0.82[AFR][1000 genomes]
rs11608719	0.82[AFR][1000 genomes]
rs11610120	0.82[AFR][1000 genomes]
rs11610364	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11610763	0.80[AFR][1000 genomes]
rs11612432	0.82[AFR][1000 genomes]
rs11612928	0.82[AFR][1000 genomes]
rs11612938	0.82[AFR][1000 genomes]
rs11614199	0.85[EUR][1000 genomes]
rs11615056	0.83[EUR][1000 genomes]
rs1374996	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17346057	0.82[EUR][1000 genomes]
rs17346099	0.83[EUR][1000 genomes]
rs34555363	0.82[AFR][1000 genomes]
rs35034633	0.82[AFR][1000 genomes]
rs36046732	0.82[AFR][1000 genomes]
rs4897830	0.82[AFR][1000 genomes]
rs60000164	0.82[AFR][1000 genomes]
rs60539006	0.82[AFR][1000 genomes]
rs60947649	0.82[AFR][1000 genomes]
rs61930629	0.82[AFR][1000 genomes]
rs61930633	0.82[AFR][1000 genomes]
rs61930637	0.82[AFR][1000 genomes]
rs67569317	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs68111333	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7132683	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7132810	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7305658	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7308624	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73174560	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73174576	0.82[AFR][1000 genomes]
rs73174585	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73176553	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73176558	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73176566	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73184559	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73184579	0.86[EUR][1000 genomes]
rs7960720	0.81[EUR][1000 genomes]
rs7962874	0.83[EUR][1000 genomes]
rs7965339	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054573	chr12:85658602-86235433	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1035600	chr12:85661373-86235433	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1052187	chr12:85954455-86278200	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv541560	chr12:85954455-86278200	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1054475	chr12:85985510-86175711	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv541561	chr12:85985510-86175711	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86170200-86179200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr12:86171800-86177000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr12:86172400-86174600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr12:86172600-86173000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr12:86172600-86173600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:86172600-86173800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr12:86172600-86173800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr12:86172600-86174000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr12:86172600-86174200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr12:86172600-86174600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr12:86172800-86173000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr12:86172800-86173000	Enhancers	Fetal Lung	lung
13	chr12:86172800-86173800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr12:86172800-86174000	Enhancers	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links