The 2.0 version of rSNPBase

Variant report

Variant rs6727408
Chromosome Location chr2:62977785-62977786
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:62953600-63001200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
2 chr2:62958200-62981400 Weak transcription Fetal Stomach stomach
3 chr2:62958200-62981600 Weak transcription Esophagus oesophagus
4 chr2:62958200-62982800 Weak transcription Primary T helper naive cells from peripheral blood blood
5 chr2:62958200-63010200 Weak transcription Primary B cells from cord blood blood
6 chr2:62960000-62981200 Weak transcription Fetal Intestine Small intestine
7 chr2:62961200-62981400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
8 chr2:62961200-63011600 Weak transcription NHLF lung
9 chr2:62962000-62981400 Weak transcription Aorta Aorta
10 chr2:62965000-62981400 Weak transcription Cortex derived primary cultured neurospheres brain
11 chr2:62965200-62981400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
12 chr2:62967000-62997000 Weak transcription Dnd41 blood
13 chr2:62968400-62980800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
14 chr2:62968400-62995200 Weak transcription Left Ventricle heart
15 chr2:62969800-62981600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
16 chr2:62969800-62982800 Weak transcription NHEK skin
17 chr2:62969800-62987600 Weak transcription HMEC breast
18 chr2:62972000-62981200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr2:62972200-62982000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
20 chr2:62972200-62982200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
21 chr2:62972200-62983600 Weak transcription Gastric stomach
22 chr2:62972400-62987600 Weak transcription Duodenum Smooth Muscle Duodenum
23 chr2:62973000-62988800 Weak transcription Adipose Nuclei Adipose
24 chr2:62973400-62981200 Weak transcription H1 Cell Line embryonic stem cell
25 chr2:62973400-62981600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
26 chr2:62973400-62986800 Weak transcription Stomach Smooth Muscle stomach
27 chr2:62973400-62987600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
28 chr2:62973800-62990800 Weak transcription Fetal Lung lung
29 chr2:62974000-62982000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
30 chr2:62974200-63017200 Weak transcription Primary T cells from cord blood blood
31 chr2:62974800-62978000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr2:62975200-62981400 Weak transcription Liver Liver
33 chr2:62975200-62981400 Weak transcription Ovary ovary
34 chr2:62975200-62987600 Weak transcription HSMM muscle
35 chr2:62975200-62988800 Weak transcription Rectal Mucosa Donor 31 rectum
36 chr2:62975400-62985200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
37 chr2:62975800-62979000 Weak transcription NHDF-Ad bronchial
38 chr2:62975800-62981000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
39 chr2:62975800-62981400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr2:62975800-62981600 Weak transcription Primary hematopoietic stem cells short term culture blood
41 chr2:62975800-62981800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
42 chr2:62976000-62981400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
43 chr2:62976000-62985600 Weak transcription A549 lung
44 chr2:62976200-62983000 Weak transcription HepG2 liver

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Last update: Aug 31, 2015