Variant report

Variant	rs6729310
Chromosome Location	chr2:173222099-173222100
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173217515..173219675-chr2:173221263..173224259,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13391645	0.85[AFR][1000 genomes]
rs6738142	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173216800-173222200	Weak transcription	Left Ventricle	heart
2	chr2:173216800-173223600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr2:173217200-173222400	Weak transcription	Psoas Muscle	Psoas
4	chr2:173218000-173223200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr2:173218600-173222400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr2:173219400-173222200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr2:173219400-173222400	Weak transcription	Right Ventricle	heart
8	chr2:173219600-173222400	Weak transcription	Right Atrium	heart
9	chr2:173219600-173223600	Weak transcription	Lung	lung
10	chr2:173219800-173223600	Weak transcription	Pancreas	Pancrea
11	chr2:173219800-173229400	Weak transcription	Gastric	stomach
12	chr2:173219800-173233600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr2:173221000-173223000	Enhancers	Fetal Thymus	thymus
14	chr2:173221400-173223000	Enhancers	Thymus	Thymus
15	chr2:173221400-173224200	Enhancers	Spleen	Spleen
16	chr2:173221600-173223000	Enhancers	Primary T cells from cord blood	blood
17	chr2:173221800-173222800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr2:173221800-173223000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr2:173221800-173223000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr2:173221800-173223600	Enhancers	Adipose Nuclei	Adipose
21	chr2:173221800-173224200	Enhancers	Fetal Muscle Leg	muscle
22	chr2:173221800-173224200	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links