Variant report

Variant	rs6729879
Chromosome Location	chr2:212543228-212543229
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12694251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62185366	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62185368	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62185369	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6435652	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6435653	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7605957	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9798122	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875783	chr2:212530466-212564895	Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212467400-212546800	Weak transcription	Aorta	Aorta
2	chr2:212528800-212545200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr2:212530200-212546800	Weak transcription	Left Ventricle	heart
4	chr2:212538000-212546800	Weak transcription	Pancreas	Pancrea
5	chr2:212538200-212543800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:212541000-212546800	Weak transcription	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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