Variant report

Variant	rs67301795
Chromosome Location	chr3:158465692-158465693
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:158287892..158289839-chr3:158465574..158467235,2	K562	blood:

Variant related genes	Relation type
ENSG00000178053	Chromatin interaction
ENSG00000243150	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs2115944	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4264773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55835802	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58152433	0.86[ASN][1000 genomes]
rs59217052	0.86[ASN][1000 genomes]
rs59313096	0.86[ASN][1000 genomes]
rs59918529	0.86[ASN][1000 genomes]
rs59957986	0.86[ASN][1000 genomes]
rs61080878	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61387735	0.86[ASN][1000 genomes]
rs61558956	0.86[ASN][1000 genomes]
rs61696028	0.86[ASN][1000 genomes]
rs6441222	0.86[ASN][1000 genomes]
rs67305172	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67446837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6775607	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6788069	0.86[ASN][1000 genomes]
rs73015644	0.86[ASN][1000 genomes]
rs73015651	0.86[ASN][1000 genomes]
rs73015652	0.86[ASN][1000 genomes]
rs73015654	0.86[ASN][1000 genomes]
rs73015655	0.86[ASN][1000 genomes]
rs73015657	0.86[ASN][1000 genomes]
rs73015665	0.86[ASN][1000 genomes]
rs73015669	0.86[ASN][1000 genomes]
rs73017536	0.86[ASN][1000 genomes]
rs73017539	0.86[ASN][1000 genomes]
rs73017540	0.86[ASN][1000 genomes]
rs73017541	0.86[ASN][1000 genomes]
rs73158329	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73158333	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73158334	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73158346	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7617304	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7624161	0.86[ASN][1000 genomes]
rs7636023	0.86[ASN][1000 genomes]
rs7646881	0.86[ASN][1000 genomes]
rs7646987	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv1004124	chr3:158146715-158808638	Genic enhancers Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1014255	chr3:158358860-158768542	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv532665	chr3:158370013-158754245	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv948755	chr3:158388780-158672287	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	nsv877692	chr3:158430706-158828643	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv1001450	chr3:158440011-158768399	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	nsv536777	chr3:158440011-158768399	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158449800-158483000	Weak transcription	Fetal Heart	heart
2	chr3:158450800-158468000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:158450800-158485400	Weak transcription	Psoas Muscle	Psoas
4	chr3:158451000-158484200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:158451000-158485800	Weak transcription	Fetal Kidney	kidney
6	chr3:158453400-158465800	Weak transcription	Fetal Brain Female	brain
7	chr3:158453400-158467400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr3:158453400-158467600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:158453600-158486400	Weak transcription	Esophagus	oesophagus
10	chr3:158455400-158465800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr3:158457200-158468200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:158457400-158486000	Weak transcription	Right Ventricle	heart
13	chr3:158457800-158466000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr3:158457800-158486200	Weak transcription	Pancreas	Pancrea
15	chr3:158458000-158471200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr3:158459600-158468400	Strong transcription	Fetal Muscle Trunk	muscle
17	chr3:158460000-158468600	Strong transcription	Fetal Intestine Large	intestine
18	chr3:158460200-158466600	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr3:158460400-158465800	Weak transcription	Lung	lung
20	chr3:158460400-158486000	Weak transcription	Brain Hippocampus Middle	brain
21	chr3:158460800-158469400	Weak transcription	Ovary	ovary
22	chr3:158461600-158466800	Strong transcription	Fetal Muscle Leg	muscle
23	chr3:158461600-158468400	Strong transcription	Fetal Intestine Small	intestine
24	chr3:158461600-158468600	Strong transcription	Fetal Stomach	stomach
25	chr3:158462200-158466000	Strong transcription	Stomach Smooth Muscle	stomach
26	chr3:158462400-158465800	Strong transcription	Fetal Lung	lung
27	chr3:158462600-158468000	Genic enhancers	K562	blood
28	chr3:158462800-158471200	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr3:158463400-158467600	Weak transcription	Dnd41	blood
30	chr3:158463600-158468000	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr3:158463800-158467600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr3:158464000-158466600	Strong transcription	Colonic Mucosa	Colon
33	chr3:158464200-158465800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr3:158464200-158465800	Weak transcription	Brain Anterior Caudate	brain
35	chr3:158464200-158466000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr3:158464400-158465800	Enhancers	NHDF-Ad	bronchial
37	chr3:158464400-158466200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr3:158464400-158467000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr3:158464400-158467000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr3:158464400-158467000	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr3:158464400-158472600	Weak transcription	Colon Smooth Muscle	Colon
42	chr3:158464600-158465800	Enhancers	Muscle Satellite Cultured Cells	--
43	chr3:158464600-158466800	Strong transcription	Brain Inferior Temporal Lobe	brain
44	chr3:158464600-158466800	Enhancers	Monocytes-CD14+_RO01746	blood
45	chr3:158464800-158465800	Enhancers	Primary neutrophils fromperipheralblood	blood
46	chr3:158464800-158465800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr3:158464800-158466000	Strong transcription	Gastric	stomach
48	chr3:158464800-158466200	Strong transcription	Brain Angular Gyrus	brain
49	chr3:158464800-158466200	Strong transcription	Fetal Brain Male	brain
50	chr3:158464800-158466800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast

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