Variant report

Variant	rs67317712
Chromosome Location	chr7:106806830-106806831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:106591850..106595766-chr7:106806509..106808675,4	K562	blood:
2	chr7:106412910..106416228-chr7:106805514..106807981,4	K562	blood:
3	chr7:106587044..106590672-chr7:106806142..106809067,3	K562	blood:
4	chr7:106412910..106417257-chr7:106805514..106810432,10	K562	blood:
5	chr7:106616679..106618973-chr7:106805632..106807371,2	K562	blood:
6	chr7:106806268..106809018-chr7:106828300..106829930,2	MCF-7	breast:
7	chr7:106806204..106812770-chr7:106813358..106822449,17	MCF-7	breast:
8	chr7:106645322..106647719-chr7:106805775..106808975,3	K562	blood:
9	chr7:106408124..106411629-chr7:106805648..106808816,3	K562	blood:
10	chr7:106806529..106812770-chr7:107382455..107386610,12	K562	blood:
11	chr7:106592976..106594639-chr7:106806509..106808050,2	K562	blood:
12	chr7:106806710..106808917-chr7:107066397..107068811,2	K562	blood:
13	chr7:106805150..106808091-chr7:106837685..106839409,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000228742	Chromatin interaction
ENSG00000105856	Chromatin interaction
ENSG00000243797	Chromatin interaction
ENSG00000241764	Chromatin interaction
ENSG00000105879	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1804175	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41276181	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs67010796	0.94[EUR][1000 genomes]
rs68064569	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs68076207	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3383027	chr7:106802625-107096474	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106760400-106808400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:106763000-106807800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr7:106778400-106807800	Weak transcription	Brain Germinal Matrix	brain
4	chr7:106780000-106807800	Weak transcription	Fetal Heart	heart
5	chr7:106782600-106808000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:106782800-106807800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:106783600-106807600	Weak transcription	Fetal Stomach	stomach
8	chr7:106785400-106808000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:106785800-106807600	Weak transcription	Fetal Kidney	kidney
10	chr7:106788000-106808000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr7:106788200-106807600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr7:106788400-106808000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:106788800-106807200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:106788800-106807600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr7:106788800-106807800	Weak transcription	Ovary	ovary
16	chr7:106789400-106808200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr7:106790000-106807200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:106791000-106807600	Weak transcription	Brain Anterior Caudate	brain
19	chr7:106791200-106807800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr7:106792200-106808400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr7:106794000-106807200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr7:106794000-106808200	Weak transcription	Left Ventricle	heart
23	chr7:106795600-106808400	Weak transcription	Gastric	stomach
24	chr7:106797800-106807600	Weak transcription	Fetal Brain Female	brain
25	chr7:106798200-106807400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr7:106798400-106807000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr7:106800000-106807200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr7:106800200-106807800	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr7:106801200-106807200	Weak transcription	Fetal Lung	lung
30	chr7:106801400-106807200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr7:106801400-106807400	Weak transcription	Adipose Nuclei	Adipose
32	chr7:106802200-106807800	Weak transcription	Fetal Brain Male	brain
33	chr7:106802800-106807600	Enhancers	Hela-S3	cervix
34	chr7:106803200-106807400	Enhancers	HUVEC	blood vessel
35	chr7:106803600-106807200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr7:106805000-106807600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr7:106806000-106807800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr7:106806000-106807800	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr7:106806200-106807600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr7:106806200-106807600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr7:106806200-106807800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr7:106806400-106807000	Enhancers	K562	blood
43	chr7:106806400-106807600	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr7:106806400-106807600	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr7:106806400-106807600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr7:106806400-106807800	Weak transcription	Fetal Intestine Small	intestine
47	chr7:106806600-106807600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr7:106806600-106807600	Enhancers	Dnd41	blood
49	chr7:106806800-106807400	Enhancers	Fetal Intestine Large	intestine
50	chr7:106806800-106807600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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