Variant report

Variant	rs67317736
Chromosome Location	chr2:86726218-86726219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86720341..86722407-chr2:86724543..86726613,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs55748755	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72844689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72845606	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412938	chr2:86370969-86867936	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv532724	chr2:86622295-87086407	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86671800-86726600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr2:86674200-86726800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr2:86676600-86727200	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr2:86679800-86757000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr2:86681600-86727000	Strong transcription	Rectal Mucosa Donor 29	rectum
6	chr2:86682000-86726600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr2:86696000-86727000	Strong transcription	Primary T cells fromperipheralblood	blood
8	chr2:86697600-86727200	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr2:86697800-86728800	Strong transcription	Primary T cells from cord blood	blood
10	chr2:86699400-86727000	Strong transcription	Placenta	Placenta
11	chr2:86704800-86726400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr2:86704800-86726600	Strong transcription	NHDF-Ad	bronchial
13	chr2:86708800-86726600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr2:86709200-86726600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:86709200-86737400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr2:86712800-86726600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr2:86713400-86727400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr2:86717200-86726600	Weak transcription	Pancreas	Pancrea
19	chr2:86717400-86726600	Weak transcription	Stomach Mucosa	stomach
20	chr2:86718800-86726600	Weak transcription	Gastric	stomach
21	chr2:86718800-86726600	Weak transcription	Right Ventricle	heart
22	chr2:86719400-86726600	Weak transcription	Spleen	Spleen
23	chr2:86719800-86726600	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr2:86719800-86726800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr2:86719800-86726800	Strong transcription	Liver	Liver
26	chr2:86719800-86726800	Weak transcription	Esophagus	oesophagus
27	chr2:86719800-86734600	Weak transcription	Psoas Muscle	Psoas
28	chr2:86720400-86726600	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr2:86720400-86727000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr2:86721400-86728000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
31	chr2:86722000-86726400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr2:86722000-86727200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr2:86722200-86727000	Strong transcription	Fetal Stomach	stomach
34	chr2:86722200-86730600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr2:86722400-86726400	Weak transcription	Small Intestine	intestine
36	chr2:86722600-86726400	Strong transcription	Fetal Brain Female	brain
37	chr2:86723000-86726600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr2:86723000-86726600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr2:86723400-86726400	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr2:86723400-86726600	Strong transcription	Adipose Nuclei	Adipose
41	chr2:86723800-86726600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr2:86723800-86726600	Strong transcription	Brain Germinal Matrix	brain
43	chr2:86723800-86727000	Strong transcription	Fetal Muscle Trunk	muscle
44	chr2:86723800-86728000	Strong transcription	Colon Smooth Muscle	Colon
45	chr2:86724000-86726400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr2:86724000-86726600	Strong transcription	Fetal Thymus	thymus
47	chr2:86724000-86726800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr2:86724000-86727200	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr2:86724000-86728000	Strong transcription	Muscle Satellite Cultured Cells	--
50	chr2:86724000-86728600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell

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