Variant report

Variant	rs6732384
Chromosome Location	chr2:38863221-38863222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:38860089..38863428-chr2:38976891..38979875,4	K562	blood:
2	chr2:38861742..38863889-chr2:38865469..38867826,3	K562	blood:
3	chr2:38861872..38863650-chr2:38976891..38979789,2	K562	blood:
4	chr2:38829210..38832278-chr2:38859055..38864456,6	K562	blood:
5	chr2:38862386..38864039-chr2:38870726..38872820,2	K562	blood:
6	chr2:38826787..38832652-chr2:38859055..38867252,11	K562	blood:
7	chr2:38861742..38863266-chr2:38865469..38867826,2	K562	blood:
8	chr2:38846799..38849062-chr2:38862889..38864827,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000115875	Chromatin interaction
ENSG00000152147	Chromatin interaction
ENSG00000235586	Chromatin interaction
ENSG00000143889	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1543880	0.85[AMR][1000 genomes]
rs17022945	0.85[AMR][1000 genomes]
rs41446253	0.85[AMR][1000 genomes]
rs55773228	0.85[AMR][1000 genomes]
rs55820712	0.85[AMR][1000 genomes]
rs55957936	0.85[AMR][1000 genomes]
rs56218469	0.83[AMR][1000 genomes]
rs56251362	0.85[AMR][1000 genomes]
rs59114683	0.85[AMR][1000 genomes]
rs60475078	0.85[AMR][1000 genomes]
rs60695093	0.85[AMR][1000 genomes]
rs6544167	0.85[AMR][1000 genomes]
rs6727765	0.85[AMR][1000 genomes]
rs6732743	0.85[AMR][1000 genomes]
rs6755260	0.85[AMR][1000 genomes]
rs72897608	0.85[AMR][1000 genomes]
rs72897610	0.85[AMR][1000 genomes]
rs72905837	0.85[AMR][1000 genomes]
rs72905843	0.85[AMR][1000 genomes]
rs72905844	0.85[AMR][1000 genomes]
rs72905847	0.85[AMR][1000 genomes]
rs72905861	0.85[AMR][1000 genomes]
rs72905863	0.85[AMR][1000 genomes]
rs72905868	0.85[AMR][1000 genomes]
rs72905869	0.85[AMR][1000 genomes]
rs72905871	0.85[AMR][1000 genomes]
rs72905880	0.85[AMR][1000 genomes]
rs73929025	0.83[AMR][1000 genomes]
rs73929026	0.83[AMR][1000 genomes]
rs73929027	0.83[AMR][1000 genomes]
rs73929050	0.85[AMR][1000 genomes]
rs73929059	1.00[AMR][1000 genomes]
rs73929077	0.85[AMR][1000 genomes]
rs73929087	0.83[AMR][1000 genomes]
rs73931076	0.83[AMR][1000 genomes]
rs73931078	0.83[AMR][1000 genomes]
rs73931606	1.00[AMR][1000 genomes]
rs7579589	1.00[AMR][1000 genomes]
rs7606435	0.85[AMR][1000 genomes]
rs7606552	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916059	chr2:38332341-39119398	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	143 gene(s)	inside rSNPs	diseases
2	nsv9646	chr2:38358311-39082189	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
3	nsv873881	chr2:38745624-38877636	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv581484	chr2:38799820-38874177	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv581485	chr2:38839323-38893660	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	nsv873882	chr2:38858669-38921498	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv2762495	chr2:38861095-38886391	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:38861000-38863600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:38862800-38870000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr2:38862800-38870200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr2:38863200-38863400	Enhancers	Stomach Mucosa	stomach
5	chr2:38863200-38863600	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links