Variant report

Variant	rs6732674
Chromosome Location	chr2:100751157-100751158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17023532	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17023563	0.85[AFR][1000 genomes]
rs17023571	0.81[AFR][1000 genomes]
rs17023572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6747250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv458707	chr2:100687778-100753490	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv582529	chr2:100687778-100753490	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv582530	chr2:100739970-100774287	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100732000-100754400	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr2:100742400-100753600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr2:100742400-100754000	Weak transcription	Gastric	stomach
4	chr2:100742800-100754000	Weak transcription	Lung	lung
5	chr2:100743200-100751400	Weak transcription	Fetal Thymus	thymus
6	chr2:100744200-100751400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr2:100745400-100751200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr2:100745800-100751400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr2:100746000-100751400	Weak transcription	Dnd41	blood
10	chr2:100746200-100764800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr2:100747000-100751600	Weak transcription	Spleen	Spleen
12	chr2:100747000-100751800	Weak transcription	Primary T cells from cord blood	blood
13	chr2:100747000-100753800	Weak transcription	Thymus	Thymus
14	chr2:100747200-100751200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr2:100747200-100758400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr2:100750200-100751200	Weak transcription	Primary B cells from peripheral blood	blood
17	chr2:100750200-100754000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr2:100751000-100753600	Genic enhancers	Primary B cells from cord blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links