Variant report

Variant	rs6733291
Chromosome Location	chr2:179649871-179649872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:179648853..179650532-chr2:179651365..179653001,2	K562	blood:
2	chr2:179647639..179651545-chr2:179652992..179655773,3	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11693372	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12464151	1.00[CHB][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12465459	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12469367	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12471428	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12992014	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13006510	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1844334	1.00[ASN][1000 genomes]
rs2366912	0.80[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs35770984	0.87[AFR][1000 genomes]
rs3769858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6715406	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6715901	0.92[YRI][hapmap];0.89[AFR][1000 genomes]
rs6729746	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7561149	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7591782	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7592323	0.80[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7600330	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834470	chr2:179555152-179728726	Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv934108	chr2:179556852-179729925	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179533600-179669200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr2:179605400-179662400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:179610800-179671400	Weak transcription	Ovary	ovary
4	chr2:179627000-179655200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:179627400-179653200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr2:179627600-179652600	Weak transcription	Brain Substantia Nigra	brain
7	chr2:179627600-179663800	Weak transcription	Thymus	Thymus
8	chr2:179629600-179666200	Weak transcription	GM12878-XiMat	blood
9	chr2:179630600-179651000	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr2:179632000-179658800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr2:179632400-179667800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr2:179636200-179660600	Weak transcription	Brain Anterior Caudate	brain
13	chr2:179637200-179651000	Strong transcription	Primary T cells from cord blood	blood
14	chr2:179637200-179651000	Strong transcription	HSMMtube	muscle
15	chr2:179639000-179672000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr2:179639400-179671400	Weak transcription	Gastric	stomach
17	chr2:179642200-179650200	Weak transcription	Fetal Intestine Large	intestine
18	chr2:179642600-179653000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
19	chr2:179644800-179655400	Weak transcription	Primary B cells from peripheral blood	blood
20	chr2:179646000-179650000	Weak transcription	Psoas Muscle	Psoas
21	chr2:179646000-179650600	Strong transcription	Left Ventricle	heart
22	chr2:179646000-179657600	Weak transcription	Primary B cells from cord blood	blood
23	chr2:179646000-179684800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr2:179646400-179650800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr2:179646400-179659400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr2:179646800-179651600	Genic enhancers	Fetal Heart	heart
27	chr2:179647000-179650600	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr2:179647600-179650000	Weak transcription	Fetal Muscle Trunk	muscle
29	chr2:179647600-179650600	Strong transcription	Fetal Muscle Leg	muscle
30	chr2:179647800-179650000	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr2:179647800-179650400	Genic enhancers	Skeletal Muscle Female	skeletal muscle
32	chr2:179647800-179655400	Weak transcription	Pancreas	Pancrea
33	chr2:179647800-179658800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr2:179647800-179672000	Weak transcription	Fetal Thymus	thymus
35	chr2:179648200-179650200	Weak transcription	Right Ventricle	heart
36	chr2:179648400-179667200	Weak transcription	HSMM	muscle
37	chr2:179648800-179650200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr2:179648800-179650600	Strong transcription	Primary hematopoietic stem cells	blood
39	chr2:179649000-179650800	Weak transcription	Spleen	Spleen
40	chr2:179649000-179657600	Weak transcription	Aorta	Aorta
41	chr2:179649200-179655200	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr2:179649200-179657600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links