Variant report
| Variant | rs6733362 |
|---|---|
| Chromosome Location | chr2:67913224-67913225 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| Variant related genes | Relation type |
|---|---|
| ENSG00000235495 | TF binding region |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs12465109 | 0.90[AFR][1000 genomes] |
| rs1367459 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1367460 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1367462 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1367463 | 0.97[EUR][1000 genomes] |
| rs1541864 | 0.95[EUR][1000 genomes] |
| rs1541865 | 0.97[EUR][1000 genomes] |
| rs1549782 | 0.96[EUR][1000 genomes] |
| rs1583156 | 0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1594415 | 0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1991637 | 0.91[ASN][1000 genomes] |
| rs1991640 | 0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2861711 | 0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2861713 | 0.86[ASN][1000 genomes] |
| rs4671819 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4671820 | 0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4671822 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4671824 | 0.83[EUR][1000 genomes] |
| rs4671828 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4671830 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7557615 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7560271 | 0.91[ASN][1000 genomes] |
| rs971096 | 0.95[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534389 | chr2:67388428-68225338 | Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 36 gene(s) | inside rSNPs | diseases |
| 2 | nsv1007345 | chr2:67870225-67980094 | Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv834250 | chr2:67897722-68051532 | Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
