Variant report

Variant	rs6734311
Chromosome Location	chr2:182139508-182139509
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56118925	0.89[EUR][1000 genomes]
rs62180206	0.95[EUR][1000 genomes]
rs6706833	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73034937	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1002647	chr2:182078521-182392273	Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv536064	chr2:182078521-182392273	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6734311	LOC100130691	cis	parietal	SCAN
rs6734311	CWC22	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182117800-182140200	Weak transcription	Dnd41	blood
2	chr2:182117800-182140600	Weak transcription	Fetal Thymus	thymus
3	chr2:182128400-182139800	Weak transcription	Primary T cells from cord blood	blood
4	chr2:182128400-182139800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr2:182135200-182139800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr2:182135400-182139800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr2:182137000-182139800	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr2:182137000-182140600	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr2:182137200-182139800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr2:182137800-182140600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr2:182138400-182142200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr2:182138600-182139800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr2:182138600-182145200	Weak transcription	HSMMtube	muscle
14	chr2:182138800-182139800	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr2:182139200-182141200	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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