Variant report

Variant	rs6735185
Chromosome Location	chr2:190490067-190490068
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:190445381..190447418-chr2:190489574..190492312,2	K562	blood:

Variant related genes	Relation type
ENSG00000138449	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1437887	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs28454062	0.86[ASN][1000 genomes]
rs3860492	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4667292	0.87[ASN][1000 genomes]
rs59901914	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6735087	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7580851	0.87[JPT][hapmap]
rs7587662	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7604386	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190479000-190503800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:190484000-190490600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr2:190484400-190493800	Weak transcription	A549	lung
4	chr2:190484600-190494400	Weak transcription	HUVEC	blood vessel
5	chr2:190486200-190494400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:190487200-190490600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr2:190487400-190494000	Weak transcription	Stomach Mucosa	stomach
8	chr2:190488200-190494000	Weak transcription	Ovary	ovary
9	chr2:190489000-190490800	Enhancers	K562	blood
10	chr2:190489400-190490200	Enhancers	Hela-S3	cervix
11	chr2:190489400-190490400	Enhancers	HepG2	liver
12	chr2:190489400-190491800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr2:190489600-190490200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr2:190489600-190490600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr2:190489600-190494200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr2:190489600-190494200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr2:190489800-190490800	Weak transcription	Primary T cells from cord blood	blood
18	chr2:190489800-190493600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr2:190489800-190494200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr2:190490000-190490400	Weak transcription	Primary T helper cells PMA-I stimulated	--

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