Variant report

Variant	rs6735448
Chromosome Location	chr2:179910839-179910840
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs58909973	1.00[AMR][1000 genomes]
rs7557456	1.00[YRI][hapmap];0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949133	chr2:179711376-180124327	Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv875457	chr2:179775893-179966804	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv875458	chr2:179780624-179966804	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv875464	chr2:179843612-179939493	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv875465	chr2:179843612-179966804	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv508184	chr2:179896384-179965419	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179897400-179913000	Weak transcription	Thymus	Thymus
2	chr2:179897400-179913400	Weak transcription	Fetal Thymus	thymus
3	chr2:179897400-179913800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:179897600-179912600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr2:179897600-179913800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr2:179906800-179911600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:179907400-179913200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr2:179907600-179912800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr2:179908800-179913400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:179909200-179911200	Enhancers	Dnd41	blood
11	chr2:179909400-179911000	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr2:179909400-179911000	Weak transcription	Psoas Muscle	Psoas
13	chr2:179909400-179911000	Weak transcription	Right Ventricle	heart
14	chr2:179909400-179911000	Weak transcription	HSMMtube	muscle
15	chr2:179909400-179912400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr2:179909400-179913800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr2:179909400-179914000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr2:179909400-179914000	Weak transcription	Pancreas	Pancrea
19	chr2:179909400-179916000	Weak transcription	Spleen	Spleen
20	chr2:179909600-179911000	Weak transcription	Left Ventricle	heart
21	chr2:179909600-179912000	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr2:179909600-179912400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr2:179909600-179913400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr2:179909600-179916000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr2:179909800-179912000	Weak transcription	Primary hematopoietic stem cells	blood
26	chr2:179910200-179911400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr2:179910200-179913000	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr2:179910400-179911200	Genic enhancers	Fetal Heart	heart
29	chr2:179910400-179911400	Strong transcription	HUES6 Cell Line	embryonic stem cell
30	chr2:179910400-179911400	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr2:179910400-179911600	ZNF genes & repeats	GM12878-XiMat	blood
32	chr2:179910400-179912800	Enhancers	Primary B cells from cord blood	blood
33	chr2:179910400-179913400	Enhancers	Primary B cells from peripheral blood	blood
34	chr2:179910600-179911000	ZNF genes & repeats	Primary T cells from cord blood	blood
35	chr2:179910600-179911000	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr2:179910600-179911200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr2:179910600-179911400	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr2:179910600-179911400	Strong transcription	Fetal Intestine Large	intestine
39	chr2:179910800-179911000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr2:179910800-179911200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr2:179910800-179911200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
42	chr2:179910800-179911400	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr2:179910800-179911400	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr2:179910800-179911400	Strong transcription	Fetal Muscle Leg	muscle
45	chr2:179910800-179912800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr2:179910800-179915800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links