Variant report

Variant	rs6735658
Chromosome Location	chr2:10116084-10116085
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:9937709..9940451-chr2:10113926..10116803,3	MCF-7	breast:
2	chr2:10107517..10109483-chr2:10116044..10117875,2	K562	blood:
3	chr2:10114765..10117032-chr2:10181860..10185169,3	MCF-7	breast:
4	chr2:10115856..10117768-chr2:10213070..10215321,2	K562	blood:
5	chr2:10109306..10112948-chr2:10113189..10116781,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000172059	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11884250	1.00[ASN][1000 genomes]
rs11888501	1.00[ASN][1000 genomes]
rs11893694	1.00[ASN][1000 genomes]
rs11902268	1.00[ASN][1000 genomes]
rs11902457	1.00[ASN][1000 genomes]
rs16867251	1.00[ASN][1000 genomes]
rs16867254	1.00[ASN][1000 genomes]
rs16867256	1.00[ASN][1000 genomes]
rs16867257	1.00[ASN][1000 genomes]
rs16867261	1.00[ASN][1000 genomes]
rs41264185	1.00[ASN][1000 genomes]
rs41264203	1.00[ASN][1000 genomes]
rs4496316	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4613247	1.00[ASN][1000 genomes]
rs55780001	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59658303	1.00[ASN][1000 genomes]
rs60026782	1.00[ASN][1000 genomes]
rs61221335	1.00[ASN][1000 genomes]
rs6726950	1.00[ASN][1000 genomes]
rs6730919	1.00[ASN][1000 genomes]
rs6731160	1.00[ASN][1000 genomes]
rs6733974	1.00[ASN][1000 genomes]
rs6734239	1.00[ASN][1000 genomes]
rs6741117	1.00[ASN][1000 genomes]
rs6744044	1.00[ASN][1000 genomes]
rs6744047	1.00[ASN][1000 genomes]
rs6754701	1.00[ASN][1000 genomes]
rs73913930	1.00[ASN][1000 genomes]
rs7601896	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948591	chr2:9922257-10141191	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv1843231	chr2:9979766-10141191	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1011125	chr2:9996740-10293803	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
4	nsv1011689	chr2:10023891-10293803	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
5	nsv1002769	chr2:10064511-10157028	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv997334	chr2:10080327-10189279	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv828297	chr2:10109299-10236332	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10094800-10124400	Weak transcription	Fetal Intestine Large	intestine
2	chr2:10101000-10117000	Strong transcription	HepG2	liver
3	chr2:10101400-10144800	Weak transcription	Brain Germinal Matrix	brain
4	chr2:10101600-10116400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr2:10101600-10136400	Weak transcription	Brain Angular Gyrus	brain
6	chr2:10102200-10136400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr2:10102400-10116600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr2:10104600-10130200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr2:10106000-10119800	Weak transcription	Dnd41	blood
10	chr2:10110200-10117800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr2:10110400-10116200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr2:10110600-10117200	Enhancers	NHDF-Ad	bronchial
13	chr2:10111000-10116200	Weak transcription	Adipose Nuclei	Adipose
14	chr2:10111000-10117000	Enhancers	NHLF	lung
15	chr2:10111200-10116400	Weak transcription	Psoas Muscle	Psoas
16	chr2:10112600-10116800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr2:10112600-10117000	Enhancers	NH-A	brain
18	chr2:10112600-10117000	Enhancers	Osteobl	bone
19	chr2:10112600-10117200	Enhancers	Muscle Satellite Cultured Cells	--
20	chr2:10113200-10116200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr2:10113200-10117200	Enhancers	HUVEC	blood vessel
22	chr2:10113400-10116200	Weak transcription	Fetal Muscle Leg	muscle
23	chr2:10113400-10116200	Weak transcription	Ovary	ovary
24	chr2:10113400-10124200	Weak transcription	Fetal Intestine Small	intestine
25	chr2:10113400-10130800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr2:10113400-10136800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr2:10113400-10141200	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr2:10113600-10116200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr2:10113600-10116200	Weak transcription	Gastric	stomach
30	chr2:10113600-10116200	Weak transcription	Lung	lung
31	chr2:10113600-10116400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr2:10113600-10116400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr2:10113600-10117200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr2:10113800-10124600	Weak transcription	Fetal Kidney	kidney
35	chr2:10114000-10116400	Enhancers	Fetal Heart	heart
36	chr2:10114200-10124200	Weak transcription	K562	blood
37	chr2:10114400-10116400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr2:10114400-10116400	Weak transcription	Right Atrium	heart
39	chr2:10114600-10117000	Enhancers	Rectal Smooth Muscle	rectum
40	chr2:10114800-10117000	Enhancers	Colon Smooth Muscle	Colon
41	chr2:10115000-10148000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr2:10115200-10116200	Weak transcription	Fetal Stomach	stomach
43	chr2:10115200-10116200	Weak transcription	Stomach Mucosa	stomach
44	chr2:10115200-10116200	Enhancers	Stomach Smooth Muscle	stomach
45	chr2:10115200-10116400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr2:10115400-10116200	Weak transcription	Esophagus	oesophagus
47	chr2:10115400-10116800	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr2:10115400-10117000	Enhancers	Hela-S3	cervix
49	chr2:10115400-10117200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr2:10115400-10118200	Weak transcription	Liver	Liver

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