Variant report

Variant	rs6736063
Chromosome Location	chr2:178364001-178364002
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:178363268..178364888-chr2:178381706..178383726,2	K562	blood:
2	chr2:178357170..178361167-chr2:178362670..178365419,4	K562	blood:
3	chr2:178362131..178365887-chr2:178366524..178369960,4	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16865285	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16865420	0.83[AFR][1000 genomes]
rs1867904	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41493944	0.83[AFR][1000 genomes]
rs59509234	0.83[AFR][1000 genomes]
rs60131586	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73976747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73976777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73976778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73977640	0.83[AFR][1000 genomes]
rs73977641	0.83[AFR][1000 genomes]
rs73977642	0.83[AFR][1000 genomes]
rs73977653	0.83[AFR][1000 genomes]
rs73977654	0.83[AFR][1000 genomes]
rs73979737	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178296400-178397000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr2:178331000-178378600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr2:178331200-178378600	Weak transcription	Placenta	Placenta
4	chr2:178331200-178379200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr2:178331400-178388400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr2:178331600-178385600	Weak transcription	Spleen	Spleen
7	chr2:178331800-178373800	Weak transcription	Gastric	stomach
8	chr2:178331800-178375800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:178331800-178375800	Weak transcription	Pancreas	Pancrea
10	chr2:178331800-178389400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr2:178332000-178392800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:178332000-178393800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr2:178335000-178410600	Weak transcription	Thymus	Thymus
14	chr2:178337600-178386200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr2:178338000-178403000	Weak transcription	Brain Hippocampus Middle	brain
16	chr2:178339800-178394400	Weak transcription	Hela-S3	cervix
17	chr2:178342400-178392000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr2:178342600-178391000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr2:178343800-178379400	Weak transcription	NHEK	skin
20	chr2:178343800-178391200	Weak transcription	HMEC	breast
21	chr2:178344000-178374000	Weak transcription	Fetal Muscle Trunk	muscle
22	chr2:178344200-178371000	Weak transcription	A549	lung
23	chr2:178344800-178381200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr2:178348000-178375000	Weak transcription	Adipose Nuclei	Adipose
25	chr2:178348400-178402600	Weak transcription	NHDF-Ad	bronchial
26	chr2:178349800-178374600	Weak transcription	Left Ventricle	heart
27	chr2:178349800-178377600	Weak transcription	Fetal Intestine Small	intestine
28	chr2:178349800-178378000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr2:178349800-178383400	Weak transcription	Fetal Stomach	stomach
30	chr2:178349800-178407800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr2:178350000-178407000	Weak transcription	Osteobl	bone
32	chr2:178354000-178377400	Weak transcription	GM12878-XiMat	blood
33	chr2:178354600-178392000	Weak transcription	Brain Anterior Caudate	brain
34	chr2:178355000-178380600	Weak transcription	Fetal Heart	heart
35	chr2:178355000-178384400	Weak transcription	Rectal Smooth Muscle	rectum
36	chr2:178356000-178405400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr2:178356400-178384400	Weak transcription	Colon Smooth Muscle	Colon
38	chr2:178358200-178379200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr2:178358400-178372200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr2:178358400-178374000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr2:178358400-178390000	Weak transcription	Colonic Mucosa	Colon
42	chr2:178358600-178364800	Weak transcription	HUVEC	blood vessel
43	chr2:178358600-178366000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr2:178358600-178367000	Weak transcription	Primary T cells from cord blood	blood
45	chr2:178358600-178367800	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr2:178358600-178368600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr2:178358600-178369800	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr2:178358600-178372400	Weak transcription	Primary hematopoietic stem cells	blood
49	chr2:178358600-178372400	Weak transcription	Liver	Liver
50	chr2:178358600-178372400	Weak transcription	Brain Angular Gyrus	brain

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