Variant report

Variant	rs6736162
Chromosome Location	chr2:64208924-64208925
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:64203137..64204872-chr2:64208577..64210562,2	K562	blood:
2	chr2:64193653..64196414-chr2:64208633..64211080,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs61651647	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6546047	0.86[ASW][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6705018	1.00[AMR][1000 genomes]
rs6726629	0.86[ASW][hapmap];0.89[LWK][hapmap]
rs6736718	1.00[AMR][1000 genomes]
rs6755620	0.86[ASW][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs73935027	1.00[AMR][1000 genomes]
rs73935030	1.00[AMR][1000 genomes]
rs73935042	1.00[AMR][1000 genomes]
rs73935043	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73935045	1.00[AMR][1000 genomes]
rs73935046	1.00[AMR][1000 genomes]
rs73935047	1.00[AMR][1000 genomes]
rs73935054	1.00[AMR][1000 genomes]
rs7566977	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7602730	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv531376	chr2:64094322-64521876	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1002209	chr2:64160385-64238475	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64114000-64212000	Weak transcription	Small Intestine	intestine
2	chr2:64130400-64211200	Weak transcription	Fetal Brain Male	brain
3	chr2:64139800-64220600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr2:64154800-64242600	Weak transcription	Aorta	Aorta
5	chr2:64159600-64211600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr2:64169000-64215000	Weak transcription	Brain Angular Gyrus	brain
7	chr2:64175600-64213000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr2:64176000-64228000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr2:64177600-64212600	Weak transcription	Colon Smooth Muscle	Colon
10	chr2:64178200-64211400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr2:64185800-64245000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr2:64186800-64216200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:64187600-64210200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr2:64187600-64211400	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr2:64187800-64210200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:64187800-64211200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr2:64188000-64210000	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr2:64190000-64212000	Weak transcription	Stomach Mucosa	stomach
19	chr2:64190000-64212800	Weak transcription	Brain Substantia Nigra	brain
20	chr2:64194000-64243200	Weak transcription	NHLF	lung
21	chr2:64196400-64212400	Weak transcription	Colonic Mucosa	Colon
22	chr2:64197600-64209200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr2:64198400-64209800	Weak transcription	Brain Hippocampus Middle	brain
24	chr2:64198400-64210000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr2:64198400-64211400	Weak transcription	NH-A	brain
26	chr2:64198400-64211800	Weak transcription	HSMMtube	muscle
27	chr2:64198400-64213400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr2:64198600-64212600	Weak transcription	Fetal Heart	heart
29	chr2:64198600-64228000	Weak transcription	Right Ventricle	heart
30	chr2:64198800-64212200	Weak transcription	Rectal Smooth Muscle	rectum
31	chr2:64199000-64212200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr2:64199000-64212800	Weak transcription	Brain Anterior Caudate	brain
33	chr2:64201400-64211600	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr2:64201800-64209000	Weak transcription	Hela-S3	cervix
35	chr2:64202200-64210200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr2:64202800-64232400	Weak transcription	Stomach Smooth Muscle	stomach
37	chr2:64203200-64212600	Weak transcription	K562	blood
38	chr2:64203200-64228400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr2:64203400-64209400	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr2:64203400-64211400	Weak transcription	Fetal Brain Female	brain
41	chr2:64203400-64212200	Weak transcription	Esophagus	oesophagus
42	chr2:64203400-64212200	Weak transcription	Lung	lung
43	chr2:64203400-64212200	Weak transcription	Pancreas	Pancrea
44	chr2:64203400-64213400	Weak transcription	Spleen	Spleen
45	chr2:64203400-64228000	Weak transcription	Ovary	ovary
46	chr2:64203600-64209600	Weak transcription	Fetal Kidney	kidney
47	chr2:64203600-64212000	Weak transcription	Fetal Intestine Small	intestine
48	chr2:64203600-64212200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr2:64203600-64212400	Weak transcription	NHEK	skin
50	chr2:64203600-64216400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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