Variant report

Variant	rs6736555
Chromosome Location	chr2:10952715-10952716
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:10829660..10832488-chr2:10951407..10954824,3	MCF-7	breast:
2	chr1:147735586..147736487-chr2:10952621..10953242,2	HCT-116	colon:
3	chr18:3448085..3448719-chr2:10952465..10952999,2	Hela-S3	cervix:
4	chr2:10946127..10948474-chr2:10951260..10952825,2	MCF-7	breast:
5	chr2:10951194..10953015-chr2:11483398..11486312,2	MCF-7	breast:
6	chr2:10856305..10858960-chr2:10950957..10952769,2	MCF-7	breast:
7	chr2:10939578..10942243-chr2:10950917..10952811,2	MCF-7	breast:
8	chr2:10951075..10954804-chr2:10970791..10972657,3	MCF-7	breast:
9	chr2:10830588..10832788-chr2:10950319..10952753,2	MCF-7	breast:
10	chr16:23681469..23682990-chr2:10951144..10952752,2	MCF-7	breast:
11	chr2:10950888..10952824-chr2:11133924..11136020,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000143870	Chromatin interaction
ENSG00000199879	Chromatin interaction
ENSG00000115761	Chromatin interaction
ENSG00000177426	Chromatin interaction
ENSG00000243819	Chromatin interaction
ENSG00000236162	Chromatin interaction
ENSG00000134318	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10185558	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10197695	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10198312	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs13382264	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13382367	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16856645	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs60116713	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6432146	0.87[AMR][1000 genomes]
rs6748808	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73170277	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73170293	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7568342	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7574339	0.87[AMR][1000 genomes]
rs7574716	0.87[AMR][1000 genomes]
rs7595917	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9287723	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10950400-10953600	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr2:10950600-10953800	Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr2:10950800-10953200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr2:10950800-10953400	Active TSS	Left Ventricle	heart
5	chr2:10950800-10953600	Active TSS	Gastric	stomach
6	chr2:10951000-10953200	Active TSS	H1 Cell Line	embryonic stem cell
7	chr2:10951000-10953400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr2:10951000-10953400	Active TSS	HSMMtube	muscle
9	chr2:10951000-10953600	Active TSS	Ovary	ovary
10	chr2:10951000-10953600	Active TSS	HSMM	muscle
11	chr2:10951200-10953400	Active TSS	GM12878-XiMat	blood
12	chr2:10951200-10953600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr2:10951200-10953600	Active TSS	NHLF	lung
14	chr2:10951400-10953200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr2:10951400-10953400	Active TSS	Lung	lung
16	chr2:10951400-10953400	Active TSS	NHDF-Ad	bronchial
17	chr2:10951400-10953600	Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr2:10951400-10953600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr2:10951400-10953600	Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr2:10951600-10953400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
21	chr2:10951600-10953400	Active TSS	Muscle Satellite Cultured Cells	--
22	chr2:10951600-10953400	Active TSS	Small Intestine	intestine
23	chr2:10951600-10953400	Active TSS	NH-A	brain
24	chr2:10951600-10953600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr2:10951600-10953600	Active TSS	Aorta	Aorta
26	chr2:10951600-10953600	Active TSS	Fetal Kidney	kidney
27	chr2:10951600-10953800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr2:10951800-10952800	Bivalent/Poised TSS	HepG2	liver
29	chr2:10951800-10953000	Active TSS	Spleen	Spleen
30	chr2:10951800-10953200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr2:10951800-10953200	Active TSS	Primary T helper cells PMA-I stimulated	--
32	chr2:10951800-10953400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr2:10951800-10953400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr2:10951800-10953400	Active TSS	HUES6 Cell Line	embryonic stem cell
35	chr2:10951800-10953400	Active TSS	HUES64 Cell Line	embryonic stem cell
36	chr2:10951800-10953400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr2:10951800-10953400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
38	chr2:10951800-10953400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr2:10951800-10953400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr2:10951800-10953400	Active TSS	Liver	Liver
41	chr2:10951800-10953400	Active TSS	Brain Anterior Caudate	brain
42	chr2:10951800-10953400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
43	chr2:10951800-10953400	Active TSS	Fetal Intestine Small	intestine
44	chr2:10951800-10953400	Active TSS	Pancreas	Pancrea
45	chr2:10951800-10953400	Active TSS	Sigmoid Colon	Sigmoid Colon
46	chr2:10951800-10953400	Active TSS	A549	lung
47	chr2:10951800-10953400	Active TSS	Hela-S3	cervix
48	chr2:10951800-10953400	Active TSS	HMEC	breast
49	chr2:10951800-10953400	Active TSS	HUVEC	blood vessel
50	chr2:10951800-10953400	Active TSS	NHEK	skin

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