Variant report

Variant	rs6737355
Chromosome Location	chr2:74427254-74427255
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:6472551..6473377-chr2:74426944..74427777,2	Hela-S3	cervix:
2	chr2:74357697..74362841-chr2:74424131..74428670,5	K562	blood:
3	chr2:74366917..74386173-chr2:74421816..74431613,38	K562	blood:
4	chr2:74427072..74428786-chr2:74464824..74466711,2	K562	blood:
5	chr2:74414483..74421164-chr2:74423918..74427310,9	MCF-7	breast:
6	chr2:74425852..74427656-chr2:74647000..74649237,2	MCF-7	breast:
7	chr2:74054272..74058005-chr2:74424584..74427795,4	K562	blood:
8	chr2:74367938..74377304-chr2:74421816..74428438,25	K562	blood:
9	chr2:74227509..74230131-chr2:74424857..74427331,4	MCF-7	breast:
10	chr2:74209118..74215634-chr2:74424964..74427991,9	MCF-7	breast:
11	chr2:70474300..70476010-chr2:74425086..74427530,2	MCF-7	breast:
12	chr2:74210159..74214364-chr2:74424247..74427320,6	MCF-7	breast:
13	chr2:74398845..74401491-chr2:74424210..74427393,3	K562	blood:
14	chr2:74401100..74409624-chr2:74423713..74427389,30	MCF-7	breast:
15	chr2:74153459..74155877-chr2:74426669..74428848,2	K562	blood:
16	chr2:74400907..74407799-chr2:74422654..74428562,23	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000163170	Chromatin interaction
ENSG00000116001	Chromatin interaction
ENSG00000255989	Chromatin interaction
ENSG00000111319	Chromatin interaction
ENSG00000114956	Chromatin interaction
ENSG00000187605	Chromatin interaction
ENSG00000115998	Chromatin interaction
ENSG00000225439	Chromatin interaction
ENSG00000267958	Chromatin interaction
ENSG00000114978	Chromatin interaction
ENSG00000159239	Chromatin interaction
ENSG00000235499	Chromatin interaction
ENSG00000124356	Chromatin interaction
ENSG00000005448	Chromatin interaction
ENSG00000217702	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56370917	0.87[AFR][1000 genomes]
rs61023892	0.83[AFR][1000 genomes]
rs6715861	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6749199	1.00[AMR][1000 genomes]
rs73948705	0.90[AFR][1000 genomes]
rs73948708	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7598273	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874286	chr2:74323500-74436721	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	esv3427010	chr2:74351730-74813541	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
3	nsv834261	chr2:74391709-74613720	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74425000-74427400	Active TSS	Rectal Smooth Muscle	rectum
2	chr2:74425000-74427600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr2:74425000-74428600	Active TSS	Breast Myoepithelial Primary Cells	Breast
4	chr2:74425000-74428800	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr2:74425200-74427400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr2:74425200-74427400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr2:74425200-74427400	Flanking Active TSS	Primary B cells from cord blood	blood
8	chr2:74425200-74427400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr2:74425200-74427400	Active TSS	Fetal Brain Female	brain
10	chr2:74425200-74427600	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr2:74425200-74427600	Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr2:74425200-74427600	Active TSS	Right Ventricle	heart
13	chr2:74425200-74428000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
14	chr2:74425200-74428000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr2:74425200-74428600	Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr2:74425200-74428600	Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr2:74425400-74427400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr2:74425400-74427400	Active TSS	Ovary	ovary
19	chr2:74425400-74427400	Active TSS	Right Atrium	heart
20	chr2:74425400-74427600	Active TSS	H9 Cell Line	embryonic stem cell
21	chr2:74425400-74427600	Active TSS	Aorta	Aorta
22	chr2:74425400-74428400	Active TSS	H1 Cell Line	embryonic stem cell
23	chr2:74425400-74428600	Active TSS	GM12878-XiMat	blood
24	chr2:74425600-74427400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr2:74425600-74427400	Active TSS	Brain Anterior Caudate	brain
26	chr2:74425600-74427400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
27	chr2:74425600-74427400	Active TSS	Brain Substantia Nigra	brain
28	chr2:74425600-74427400	Active TSS	Left Ventricle	heart
29	chr2:74425600-74427400	Active TSS	Thymus	Thymus
30	chr2:74425600-74427600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr2:74425600-74427600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
32	chr2:74425600-74427600	Active TSS	Rectal Mucosa Donor 29	rectum
33	chr2:74425600-74427800	Active TSS	Primary T helper cells PMA-I stimulated	--
34	chr2:74425800-74427600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr2:74426000-74427400	Active TSS	Fetal Muscle Trunk	muscle
36	chr2:74426400-74427400	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
37	chr2:74426400-74427400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
38	chr2:74426400-74427600	Flanking Active TSS	Brain Germinal Matrix	brain
39	chr2:74426400-74427600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
40	chr2:74426400-74427800	Flanking Active TSS	HUVEC	blood vessel
41	chr2:74426600-74427400	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell
42	chr2:74426600-74427400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
43	chr2:74426600-74427400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
44	chr2:74426600-74427600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr2:74426600-74427600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
46	chr2:74426600-74428000	Transcr. at gene 5' and 3'	NHEK	skin
47	chr2:74426600-74428600	Flanking Active TSS	Dnd41	blood
48	chr2:74426600-74431600	Weak transcription	Spleen	Spleen
49	chr2:74426800-74427400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr2:74426800-74427400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood

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